AMCG00020661 (ss18l2)


Basic Information

Item Value
gene id AMCG00020661
gene name ss18l2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28325037 ~ 28328312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020661
CCGGAACAGCTTCTACAGGAGATGTTATTGTTATCGTTTAAAAATGGCCATCATTTGATGGATTGTTTAATCGGCAATGAACGAATATGTATGTGAGGGTTGGATTACACTTAGGAAACAGAGTGGACGCGGTATTTATTGAGGACTGTCACCCTGTCTCCTGAGTGGTCTAGTGGTCTACTTCTAGCAGTAGTTAATAGGCCCACCGTGGCTTTGTTGAGAGGGTGCTAAAGTCTTCAATTGTCCCGTTTTCCTCAAAAGAATACGTTACAAAATGTCCGTTGTTTTTGTGCCAAAGAAGCAACGAGGCAAAGCACAGATCAACCAGGAAGTAATACAGAGGGTATGGCGGTCTGGTTACTCGGGATATTCGTGCTCTCAATCCACTCACGCTATAAAGGCTGTATTGATCTTTTCTGTTGTGTTATTTGGGTCAGTTTTAGAACACGATACATATAGCCTATAGACTTGAATCTTTTCTAAAACCATTCATCAGTGTATTTTGAACTGTGTGTGACTTGAGTGCATATTATTCTCATagtatttatttcccattaaaGGGGTAAGTCTTTTCACAATATATCAGTACACACTGGTGATATTCCCTATTGCAAAGCAGTGCATATATGATTTATACCTATGACAATGCAGGCAACTAATGTCTTAAAATCTCTATGGGTCTTTTCatggctgttgttttttttacagctacTTGATGAAAACGACCAGTTGGTTCGCTGTATAACAGAGTACCAGCAAAAAGGAAGAGTCACCGAATGTGTCCAATACCAACAGATTTTGCACAGGAACCTAGTGTATTTGGGAACTATAGCAGATGCCAGCCCAAATTCGCCTCCAGCCACAACGACGACTCTCTGTGAAGCAGCGGAGGTGTCTGCAGCCCCCGTGTCGCTGGTGAAGGTGGATCTCAGTAATTCCTGCCCATCAGCGGATAAAGAGAGCGCTGCCACAGGAGCATTGTGAGGAGAGATGTGGGGAATAGAGTACAGTAGACTGAGATGGACACACACGGACATTATTTTGAAGTAAATACATCTGTGAAGGCCAGCTCCACAAAATGGAACGAACTGGATttgattgcattgtttttgttaactatttatataaatgcaaacctAGGGGTGagatattaattttgaaaactttATATTGTTGTAATATGGCAGCATGTAATATAGTGAATTAATAGCagattaaaattgttttttttaataaaatgtcttaaaaaaaaaaaaaacttgtgccTAAAATTAGTTATTTATGGAAACATGGTCATATACCAGTACATTTGCTACATTTAATGGGTAAAATTGCAGTAACATCACATGCCACCTGAAATGGAGAATAATTGTAAAGCTTgagacaaatattttattttaaatatattgtggatTGTGAAGCTACACAAGTTGGCATTCAGGAAATTAGCAATCATTCCTCAATTCATGTCCACTAAtgaacataatacattttaatcatattaTCATATTTTGA
>TU81116
ACATCCTCTGCACCGGAACAGCTTCTACAGGAGATGTTATTGTTATCGTTTAAAAATGGCCATCATTTGATGGATTGTTTAATCGGCAATGAACGAATATGTATGTGAGGGTTGGATTACACTTAGGAAACAGAGTGGACGCGGTATTTATTGAGGACTGTCACCCTGTCTCCTGAGTGGTCTAGTGGTCTACTTCTAGCAGTAGTTAATAGGCCCACCGTGGCTTTGTTGAGAGGGTGCTAAAGTCTTCAATTGTCCCGTTTTCCTCAAAAGAATACGTTACAAAATGTCCGTTGTTTTTGTGCCAAAGAAGCAACGAGGCAAAGCACAGATCAACCAGGAAGTAATACAGAGGctacTTGATGAAAACGACCAGTTGGTTCGCTGTATAACAGAGTACCAGCAAAAAGGAAGAGTCACCGAATGTGTCCAATACCAACAGATTTTGCACAGGAACCTAGTGTATTTGGGAACTATAGCAGATGCCAGCCCAAATTCGCCTCCAGCCACAACGACGACTCTCTGTGAAGCAGCGGAGGTGTCTGCAGCCCCCGTGTCGCTGGTGAAGGTGGATCTCAGTAATTCCTGCCCATCAGCGGATAAAGAGAGCGCTGCCACAGGAGCATTGTGAGGAGAGATGTGGGGAATAGAGTACAGTAGACTGAGATGGACACACACGGACATTATTTTGAAGTAAATACATCTGTGAAGGCCAGCTCCACAAAATGGAACGAACTGGATttgattgcattgtttttgttaactatttatataaatgcaaacctAGGGGTGagatattaattttgaaaactttATATTGTTGTAATATGGCAGCATGTAATATAGTGAATTAATAGCagattaaaattgttttttttaataaaatgtctta

Function

symbol description
ss18l2 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of dendrite morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SS18L2 (SS18 like 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020661 True 1515 mRNA 0.38 4 28325037 28328300
TU81116 False 892 TUCP 0.42 5 28325307 28328312

Neighbor

gene id symbol gene type direction distance location
AMCG00020659 gpib,LOC108428767,LOC100196524,LOC103130839 coding downstream 59846 28250873 ~ 28265191 (-)
AMCG00020658 NA coding downstream 177190 28137230 ~ 28147847 (-)
AMCG00020653 NA coding downstream 289628 27863475 ~ 28035409 (-)
AMCG00020652 NA coding downstream 467419 27795256 ~ 27857618 (-)
AMCG00020651 NA coding downstream 539012 27752194 ~ 27786025 (-)
AMCG00020662 NA coding upstream 673 28328985 ~ 28342177 (-)
AMCG00020664 kctd15,LOC107668486 coding upstream 103467 28431779 ~ 28450361 (-)
AMCG00020666 NA coding upstream 153170 28481482 ~ 28487871 (-)
AMCG00020669 cebpg coding upstream 475889 28804201 ~ 28804674 (-)
AMCG00020672 NA coding upstream 673459 29001771 ~ 29013295 (-)
G64847 NA non-coding downstream 1873 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 904391 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1088715 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 1579214 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 1592749 26731435 ~ 26732288 (-)
G64886 NA non-coding upstream 529677 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 668080 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 931245 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 1557289 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 1654801 29983113 ~ 29983365 (-)
AMCG00020657 NA other downstream 85963 28161602 ~ 28239074 (-)
G64811 NA other downstream 95390 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1075361 27246014 ~ 27249676 (-)
AMCG00020613 NA other downstream 2376694 25934901 ~ 25948343 (-)
G64470 NA other downstream 2406407 25898428 ~ 25918630 (-)
G64882 NA other upstream 460268 28788580 ~ 28796956 (-)
G65000 NA other upstream 1053003 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 1191879 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 2121433 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 2394471 30722783 ~ 30737976 (-)

Expression


Co-expression Network