AMCG00020662


Basic Information

Item Value
gene id AMCG00020662
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28328985 ~ 28342177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020662
CTTCGAAGAAGGGGAGAccagagtgagagggagagagagcgccAGAGACCCGAGGAAGGACTAGACTTTTCATCCACAGCCATCCGCTATCACAGGAGTCCCGCAGCTCCCGGAGACATCATGAGTGGGGGGACCCCGTATATCGGTAGCAAGATCAGCCTCATCTCGAAGGCCGAGATTCGCTACGAAGGGATTTTATACACTATCGACACCGAAAACTCGACCGTCGCACTCGCCAAAGTGCGATCTTTTGGCACTGAAGATCGTCCCACGGACAGGCCTATAGCACCACGAGATGAGGTTTTTGAGTATATCATCTTTCGGGGCAGCGACATCAAAGACCTCACTTCATCCTTGGGTTCCTCCCCTGCTGCGTCATTCCAGTCTGTGGGCTCCTATGCCCCTTTCAGCAGGGGCCCAGTTTCCGGATACAGCCAGTTCACCCCCAGCCCCCTGGTCAGCCAACAATTTGGTGCCGTAGGAGTGGGTCGTTCCAGTCCCCAACTGGACCCCCTGAGGAAAAGCCCCACCCTGGAGCAGGCAGTCCAGACTGCCCCCACGTCCGGCCCGGCACCCACTGCTTCCCTAGGCCGCAGGAGCCCCGCCCCGGCCAGACCCATACCATCATCCGCCAATCAGAAAGCAGCTGAACTCCAGGAGCAGAGGAGGGGTACAGATGTGCAAAAAATGCCAAGACCAGATGCAGAACAAATCAGAAATGAGAACAGGGAGGCTGCCAAACGGCAAGCAGGACCTCCTTCTGCTCGGCGCGGACGTGGGGGTCACCGTGGCAGGGGCCGCTTTGGGGTCCGGAGAGACAGCCCCATGAAGTTTGAGAAAGACTTTGACTTCGAGAGTGCTAATGCCCAGTTCAATAAAGAGGAGATTGACAGGGAATTCCAGACAAAACTGAAGCttaaagACGATAAACCTGAAAAGCCAGAGAAAGCGGTCAATGGAGAGGATAAGGGCGACTCGGGGGTTGAGACTCAGAACAGTGAAGGCAATGCGGATGAGGAAGATCCGCTGGGACCCAACTGCTACTACGACAAATCCAAGTCCTTCTTTGACAACATCTCCTGTGACGATACCAGgaaagcTGCAGAAAAAGCTGGAGTTTCAGCATTCCCGAGagagaggaggcagaCCTGGGCAGAGGAGCGGCGGATGAACGCAGAGACCTTCGGCATCCCACTGCGCCACGGTCGGGGCCGCGGTGGATACCGGGGCCGAGGCGGCATGGGCTTCCGTGGCGGCAGGGGCCGCAGCGGGGGACGGGGGAGTTTTGGCCCTCCACGCGGAGGAGGAGGCGCCTTCCGGGGTGGCTTCAGAGGAGGACGGGGCGGCAGGGAGTTCTCAGACTTTGAATACAGGaaGGACAATAAAGTGGCTGCATAGGAGGCCAGGAAGACTGATCCAAAAAGAAATGTAGCTCTTCATGGTCCAGAAAATGTTTAGGTTTCAACTTTTGACAGAAGAATGAATAAACATACTTGCTGTATATTTGTCACCAGCACTGGGGTAGACTGCTTGACTTCAAAGGGtgtaatgcagttttttttgttttgttttttttcctttaaaaaaaaaaaaaaaaaatctaaaacgaTCTTGGAAATCTTAAGCTATGTTTTGGAATATCAGCAGAAGGATGAGACAATTTATGTATAGATAAACGTACTTCAATGGATCTATTCAGTATTTTTGCATCAATATTGAGGTTTTTTTCTtactaaaacaatgtatttgataaCGTTCTGTTAGGTGTAAAGATGTATGCAGATGCCCGCTGATACTGTGATGAGAGTACTTTGATCACTGaaatagctttattttttgGATATATCCTGTAATGTACCTTAGAAGCACCAAATTCCTGTATATAGCCAGTTGGGTTCCAGTTACTGCTTTCTACAGTTTCTTTCCACTTCACATATCTTTATACCCTGTTTATTCCCAACTTTAAACTGCCTGCTGTATTTTGCCGAGTATCCCTGTTTTGAAATACTCTGGTTTTTACACTTTGCAGTTTCAATATTAATGGGTATGTCAGTCCCATGTGGTTTCCACATTCGGACATGGTCTAGGCGTCATAGTGAGTAGACATTACAAAGTAAGTGCTGGTGTGGCGAGGTGAATGCAAGATACTGAAGTTCTTGTTTCTATTCTGGCTTTACTGTTTTGGTGTAGCTAGTCTCTGCGAAGCCCCGGCTAAGGCTCATTCACACTGGAAGCTTGTAAATTGAGATCTACTTTGCAGTCTCTGGAAGCAGgacccttttcttttttaacttcgTTGTGCAGAACACATTGGCATTAACTTTCCCAATGCCGTTTCAGGTCTTTCACAGGATCAGAAATGCTGAATGTATTTACTTTCCTGAGTGAACTATtattcatttcagataacattttattctgcCCCAAAGGGTGGTACCTTGAGCACATCCCCTCCAGTCTTCTAAAGAGCAACTCTTAACCTTGTTTACTGCAGGTGGTTTGAAGCAGTAGTATGTTTTTGATAACTAAAGCCTAATAGTGCCAATAGCAGtggtgtgtggtggtggtggtggtggtggtttgtTAAAGTTTTCACCCATCTGTAACTAGTCCTGAAATCTGCACCCCAACCCCAACTAGGTTTATTCCAAGAAGGCTACATGcttttttgatttattattattttttaaacttgccTCATGAGTTTTTAATTCTGATTTAGAAAATTTGGAAATCTGTTACACACGTTGTAGAAATGTGAGCGTTATCAAGTACATGCTGATCCAGTAGAGATCCGGTAAGAGAACAGGCATGATGAATGGCTTTTGTGAAAAGTGGAATCATTTCAGATGTGGAAGGATATAGACTTGAGATTGAATAGTGCATGATGCATCTGGTCACATTACCAGCAGTGCTTCGATAGTACTTAAGTCAAAATCTTTTGTTTAAGAAACTGTAAGGGAGAGACGGAAGTGAAAAAGTTGATAAAACCCATAACATTGCTTGAACTGCAGCATCTTTGAGTTTCTAGAAGAAAAGGAACTAAGAACGTCTagctgaaatgtattcaattgcACTTTAAAGAATAGTACTGATTTATTAAACTGACTGCCATGTTGTAGAGTGCTGAATTCCCTaagcattattttgtatttacatctTGAAGAGATGATTAAGGAATAAAGCCGGTGCTAATTGTGTCCTGCACTACCTGTAGTATCCTTTGTGAATGGGCCTTGGGAGCTGCAGTTCAACACACGCATTGCATTTAAGGCTTTAggttttaatgttaatatgtaAAGGTTCCAGTAGTTGGTATTGCTTCCTAAAGTTCACTTCTAGTAAGTATTAATAGTTAACACAGGTGAACGGATACCACAGCTCTCATTTAGCCAGATTTTGTGCACTTGCCCCTTTTGTACATAGAGGGGAGACTGTGGTACAATACAGGATTTTCCCCAAATAAGGATAGGTCAGACTTTATAAAAAGTCtctaactttaaaaacaaatttagtTGGAAGCTTTTTTTCCCATGGGATCGGAAAATGCTGCATAACAGGACTTCATATTTGTCATGTCTtataaaatgatacaaaccTTTTGTGATTTTGTCTTTGTTACAATTTTACATACTGTACACATACTACATAGATCTGTTGTTCTCTACAGGAAAAGTCCCCTTTATATTTGCAGGTgcccattttaattttttggtgAAATTGAATCAAGCACTGTCCTCTGAAGTGCTATGTCTAGTAACTGAGTTCTTaagtgattatatattttaatatgattttgtaGTTTACAAAGGCCGTTGGGTTAAAAAAGGGAtccaaagatttaaaaaaaataaaggaatcgATTTTATTGGTCTCATTTCACATTGTCCTCAAAGTTGGCTCTGTACTGGGGATAAATGTATTGTGGTTGGCTGCTcactggaaggaaaaaaatatttaattaataaaattcatttagaaaagaaaatatcaatAGGTTATTTAAAGCACTACAAGGAAAACCTCTTCTAGGTAAGAGGGGACAAATAGGGCAGCTAGTAATAAGAGCAATGTCCAATAGTTTAATGTACAGTTTGACTGGAGCTTGTAGTGAATACACAGAACACTGCATGATAACCATGCCTTGTGAGAAGCCACAAAATCATGACACTGAACAACTTGGACTCTcgtttttgttcatttcttgAGAAGAGGCAGttcctgtaatgtgttgcaatAACTATATTACTGAAATTTCCCATGCGAatttaagaaaggaaaaaaaatgtacataataccAAAATGCTGTATGCTGTGAaggtttaattatattagttaCTCCTTCTTAACCTCTGGAATAATAGCCAGATGTTTTGGTGTTCACAACTTGAGCAATTTAACAGCATGGTGTACTTTCAGTGTGCCTCGCCATACAGTGAGGTTTTTATTCAATGCTAAGAATAAACAGTTGTTCAATATGTtggtctgtgttttattttattttcaatacagtgcagtttgcatttttttttccagttcttgAAGTACCCAAGAACCAAGACCTCTATTGTAACATTAAAGGAAGCAACTTTCAGTAGCTTTAAAGCTATACATCTTGGTGGCCTCAGACTGTGGCATTTCATACGTATGATTAATGGCAAGAATTTACTCAACCAAAATGTACAGGGTACTACATTGATTTTGCAGCCTCATCTATTAACTAGAGCTAGCTTTGGAGCAGGCTAGTTTTGCTGTAACAGAATATATTTGTAGTTCggttttaaagtttatttccctctgtatgtttgttttagagcttttaattgtctttgttttgttaattaaaactcaataaaaaaaaaaatcttgaaa

Function

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020662 True 4872 mRNA 0.42 10 28328985 28342177

Neighbor

gene id symbol gene type direction distance location
AMCG00020659 gpib,LOC108428767,LOC100196524,LOC103130839 coding downstream 63794 28250873 ~ 28265191 (-)
AMCG00020658 NA coding downstream 181138 28137230 ~ 28147847 (-)
AMCG00020653 NA coding downstream 293576 27863475 ~ 28035409 (-)
AMCG00020652 NA coding downstream 471367 27795256 ~ 27857618 (-)
AMCG00020651 NA coding downstream 542960 27752194 ~ 27786025 (-)
AMCG00020664 kctd15,LOC107668486 coding upstream 89602 28431779 ~ 28450361 (-)
AMCG00020666 NA coding upstream 139305 28481482 ~ 28487871 (-)
AMCG00020669 cebpg coding upstream 462024 28804201 ~ 28804674 (-)
AMCG00020672 NA coding upstream 659594 29001771 ~ 29013295 (-)
AMCG00020677 NA coding upstream 717238 29059415 ~ 29071096 (-)
G64847 NA non-coding downstream 5821 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 908339 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1092663 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 1583162 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 1596697 26731435 ~ 26732288 (-)
G64886 NA non-coding upstream 515812 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 654215 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 917380 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 1543424 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 1640936 29983113 ~ 29983365 (-)
AMCG00020661 ss18l2 other downstream 673 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 89911 28161602 ~ 28239074 (-)
G64811 NA other downstream 99338 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1079309 27246014 ~ 27249676 (-)
AMCG00020613 NA other downstream 2380642 25934901 ~ 25948343 (-)
G64882 NA other upstream 446403 28788580 ~ 28796956 (-)
G65000 NA other upstream 1039138 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 1178014 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 2107568 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 2380606 30722783 ~ 30737976 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01057323_00000685_00004361 NA coding CI01057323 null 685 ~ 4975 (+)