AMCG00020672


Basic Information

Item Value
gene id AMCG00020672
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29001771 ~ 29013295 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020672
ATGGCTCCctcttgctttgttttgccCGGCAGTTTCCGGAACTTTGACCTGGAGGAGTCGCTGCAGTGTGCGAGCGACTGGCTGCTGATGGGCCCCACCTGGAGAGACGAGTACCGCGTGTGTGGCTCCCTCATCCCCCAGCCCTTCATCTCCACACGCAACCACGTGTGGCTGTTTTTCCACTCGGACCGCAGCACCTCCGGACAGGCCCAGGGCTTCCGCCTCTCCTTCATCCGTGGGAAGCTAGGCCAGAGCAGCTGCCAGAGTGACGAGTTCCTTTGCGGGAACGGCAAGTGTCTCCCCACGACCTGGAAGTGCAACGGCATGGACGAGTGCGGCGACGGGACCGACGAGAAGAGCTGCACGCCCCTGCCCACCGAGGCCCGGCCCAGCCTGTGTCCGCCGGGTACCTTCCAGTGCACGCAGGCCCAGTCCACCCAGTGCCTGCCCAACACGCTGCGCTGCAACTCGGCCCGGGACTGTGCGGATGGCTCCGATGAGGACAGCTGCCCGGACACGTCCTGTGGCAAGCGGCTGGGCAACTTCTACGGCTCCTTCGCCTCGCCCGACTTCTTCCGCCCAAACCGCAGTTCCTCTGACCTCCGCTGCTCCTGGTTTGTGGACACCCAGGACCCCAAGCACATCATTCTCCAGCTGGACCTGCAGCTGGGGTTCAGCGACTATGTCAGGGTGTACGACGGTATCGGCGAGCGCAGCGACCGGCTCCTGCAGACCCTCTCCTACCATAACAACCGCCGGCCCGCTATAGTGGAATCCAGCCGGGGACAACTCACCATCCTGTACCATGCCAAGCCCAGGAGTGGGGGCCACGGATTCAATGCTACCTACCAGGTCAAAGGTTATTGTTTCCCGGGGGAGCACCCCTGCGGCAGTGACCAGGGCTGCTACTCTGATCGGCAGCGGTGCGATGGTTACTGGCACTGCCCCACCGGCAAAGACGAGGAAGGTTGCCAGGCTTGCCAAAAAGGGGAGTACCCTTGCGAGGGGGGCAGTGGCACCTGCTATCCGGCTTCAGAGCGCTGCAACAACCAGAAGAAGTGTCCCGACGGCTCTGACGAGAAGAACTGCTTCGCCTGCCAGCCAGGCAACTTCCACTGTGGCACCAACCTGTGCATCTTCGAGACATGGCGCTGCGACGGCCAGGAGGATTGCCAGGATGGCAGTGATGAACGTGACTGCCTGGTGGCTGTCCCCCGCAAGGTCATCACCGCCGCCCTCATCGGCAGCCTGGTGTGTGGCCTGCTGCTGGTCATCGCACTGGGCTGTGCCTTCAAACTGTACTCCCTGCGCACCCGCGAGTACAGagCTTTTGAAACACAGATGACCCGGCTGGAGGCGGAGTTTGTGAGGAGAGAAGCCCCGCCCTCGTATGGTCAACTGATCGCTCAAGGCCTTATTCCCCCAGTGGAGGACTTTCCTGTCTACAACCCCTCTCAGGCCTCCGTCCTCCAGAACATCCGCACGGCCATGCGCCGCCAGATCCGCCGCCACTCCTCGCGCCGCGCCTCCTCCCGCCGCCGCCTGGGCCGCCTGTGGAGCCGGCTGTTCCACCGCGGGAGCAGAATGCGCGGCCAGATCCCGCTGCTCACCCCCCCCGGGGCAGCCCACCCCAATCTAGGCGGCGCCCCACACAGCTACCAGGCCGTGGGGGTGGGCGGGGGGGGTGCGGGACATACGCCCTCGCCCTGCTCCTCCTCCACAGCGCTGGGCCTGGCTTTGGAGGAGCAGACGGGGGGGTTTTGCCGGCCTCCTACAGACTCCACGCTCTCGCCTCCCTCCCCTCCTTCGGCTACTGACAGCTTGGAGGATCTTTCTGTAGGGACTCCTGGCTCGGAGGCCTGTGGTGGCTCCTGTAGCCAGTGTCACAGCTCTAGGCCACCCCCTCCTGGTGAGGTAGACAGTGTGGGCCCCAGGGCGGCCTGCTGCAGCTCCATGGGGCACTCCAGCTCGGCCCCGGAGCTCATCAGCAGCTCCTACAAGCGCAAAGTGTCTCGCAAGCTGGTCCAGGGCCTGGCTGCCAATCTACGAGGCGTGGGCCTGCATCACTACTCGGCCCTGGGCAGCTCCCAAGCTGCTGACCCCCAGCCCTCCTCTCGCCCACTGGGGGAACATCACACCCCACTCCCAGCCCCGCGGGGGCCCTCAGGGACTGCAGACGCATATCACAGGTGCCATTCTGTGGAAGTGCCAATCCAGGAAGAGCCTGGGTTGCTGGCTGAGAGCCACCAGGCCAGTAGCGAAGATGACGACGACGACGAATCCCTTCTCATCTGCTGA

Function

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020672 True 2298 mRNA 0.64 4 29001771 29013295

Neighbor

gene id symbol gene type direction distance location
AMCG00020669 cebpg coding downstream 197097 28804201 ~ 28804674 (-)
AMCG00020666 NA coding downstream 513900 28481482 ~ 28487871 (-)
AMCG00020664 kctd15,LOC107668486 coding downstream 551410 28431779 ~ 28450361 (-)
AMCG00020662 NA coding downstream 659594 28328985 ~ 28342177 (-)
AMCG00020659 gpib,LOC108428767,LOC100196524,LOC103130839 coding downstream 736580 28250873 ~ 28265191 (-)
AMCG00020677 NA coding upstream 46120 29059415 ~ 29071096 (-)
AMCG00020676 LOC107834818,LOC108165933 coding upstream 59011 29072306 ~ 29096123 (-)
AMCG00020675 NA coding upstream 122034 29135329 ~ 29140819 (-)
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding upstream 207385 29220680 ~ 29221402 (-)
AMCG00020681 NA coding upstream 323409 29336704 ~ 29368396 (-)
G64912 NA non-coding downstream 138 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 143417 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 678607 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1581125 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1765449 27236083 ~ 27236322 (-)
G64991 LOC103376870 non-coding upstream 246262 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 872306 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 969818 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 1113394 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1521997 30535292 ~ 30535896 (-)
G64882 NA other downstream 204815 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 673459 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 762697 28161602 ~ 28239074 (-)
G64811 NA other downstream 772124 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1752095 27246014 ~ 27249676 (-)
G65000 NA other upstream 368020 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 506896 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1436450 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1709488 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1787287 30800582 ~ 30808846 (-)

Expression


Co-expression Network