AMCG00020675


Basic Information

Item Value
gene id AMCG00020675
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29135329 ~ 29140819 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020675
CCGCACTTTTCAGCAAATGGCGCTTACATGTTGTATGAAACGTGAGATCAACGCCATGGACATAACGAAATAGAAATGCAGACTTTCCATTCAAGTATAGTTAGACATGTCTGTATGAAGAACAGAATTCCGGGGATACCAATTCCGGGCAGGGGCACCACCATGATTTGGATGAACTTTACACTAGCCAGTAGTTTACACCTGTGATTTCAAGAAATACTTTCTAGGATCCGTAATCGGAAACAAAGGCGCACTTTCTCTGCACGGCCGGTACCTGGTGCTCAGCCGCGGAACAGGGCGATGCAGCGGACAGGCACTCCAGTGCGAGTGGGAGCAGCGCCACCTTACGGCCATGTGGTTGTCAATGAGAAGTGGAGGGGCTCCACCATAGTGCAGGGCTTCCAAGGAAAGATTAAACCAATATTTGAAGATGGCCTGGGGCTTGTAGACTTCCACCTGTCCAACAGGAgctgtgtgttgtatgtttCTGAGAGTGACCTGGTGGCAGGAAGCAACTACAAGAGAAAACTGGTTCGGTTTAGAAAAGCCAGCAAGCTTAATGGGATCATCGTGGTGGAGAAGACTCAGCTGAGTGCGCAGTATTTTGCGGCCGTTCAGAAGTTTGTGGCGTTCGAATTGGGGATGACCCTGCTTCCTGTTGCCAGCCAGACCGAGGCCTCGCAGCTCATTACCCAGCTAGTCCATGATGAGAGTAAAGAGGACAGCCAGAGCCCCTTCCTGAAGAGGAGTGGAGCCAGGCTGGCAGAACCCGTGGTCCTGGCCTTGGTACAGCAGATCCCTGGGGTGGGCAAGGTGAAAGCCCTTGCTTTACTCAACCACTTCCCCAGCATTTACCAGCTGAGCAATGCCACCGCCAAGGACCTGGAGGCCGTAGTGGGACAGACGACGGCACAGCATGTCCGAACTTTCTTCACACACAGCTAGCCGGTACCTCCGCGATGTTTGATTTCAAGTCCTTGCAAATGCTTCTAAAGTCCTTTTCCATAGATTTGCGGTTCCAGAGTATCTCTAACCCCAGAgccaaggtttttttttatggaaaacaacaaaaaacaaggaaattcaACTTACACGTATGAACTTGAATAGGGAATTGAagcattgtaaatatattcattGTTGATGCTGGTATTGATTCTCTGGAATCTGTGTATCTTTTGGGGgaattagaaaattaaaatctattttggattttttaaatgaaggtcAATGAAGGCTTTATTTTAACAGCTCATTTCAGCTTATTTAGCAACTGACAACCATGCAGTATCAGACATCTAGCAGTCCATTTAGGAAAAAAGTATGCTGTGAGCAAAGGGACTCGGAAAGGTTTTGTGAGAGGCTAGAGCTGCATCTGAAAGGGGGAtagggtttctttttttcttcaaatgcgGGAGTTTGGACAGACTTGAAAGACGGTGCTGCTTGCCAGAGACTGCAAACTGCTTCCCTGGGTAACAGACTGGAGCAGGCCTTGCGTCAGCAGTGGTTCTGAAGCCTCCTTTTTAATAAGCTGACCACGAAATGCAGCCTAGAAAGTGGAAATTAAATCTGTGAGTCATTTAaaagacatttcattttaatgggaCATCTCTCTCGGTGTTTATTTTTCGGTTTccttctatttttcttttggctTCTTTTTTTAGGTTTACTTATTTAGATTAGGATTCATTGAAAGGAAAGGGATTTGTATTTCTCAGTTGTAACTCCGTACTCAGGATCTGACAGGGCCAAGAATTGGAAGCTTGCCTTTTTGGATAAGGTTCACACAATTAATAGTGCTGGGTTTTATTCTATAAGATTGCAGTgagaaaacagaatatataatCAGAGCTGTCAAACAGACTTTATCTTCTCCTTGCCCCTATTAAGCAAGTCAGCAGTTTTTCAGGTTTTGAATGTCAGATATGATCTTCACAGGAAGGAATGCCACTGCTTGGAGATCCGTTGTCTGGTAGCACAGCAAAAAGAAacgttcatttaaaaaacatgtatttttttacctCACCTCGTTGTCTGACGCCTAGTACTGTTTGAGATCCTCACCCCTTCGTgtgttagttatttattttattttttgaatgaaaTAGAAGTTCTTATAGGTTGAACGCCACAGTAGTTCTGTTTTGCCTCTTTCTCTatatcaattaaattacatataggATTACATTTTGTGGGCATGGGGGGAATGCCAGATAAAAGATATATTCTGATTTCACAAATTATACAAAAgtcaaatgaatgaatgcagaACAAAAAAGCAGAAGGACATATTTGACTTAATTCCAGTTAAAAGGAAAGTTCTATGTATAAAGGGCATTTTTGTAGTGTGACTTGTGTTTAATGACAGCTTTGTCCTCTTTGCTCCACTGTTTGCCTGTTCCTCATTAAGGCACGTCATCCCGTTGTGGATCTGGAAAGCAGAGCATTTTGATCTTTGAATTATAGCAGCTCCATTCCAAAGCTGACACACTGCCCAGATGTATTATTAGTACATTTCTGAGGCTATTAACCTCATAGAGGACAGAATGTTCAGTTTCCTGTATTTCAGATGGGAGCGGTGGTACGGACAGATCTGGAAGGTCTTCCCATCGGTGTCGGTGTGATGCCTTTTCGGCCAGGGTGGATCCAGGGAGCAATGAAAAGAGTCCAGCGGACAGCTTGATTAGCACATTGTGTTCAGGGAGCATGTATCCAAATGGTTTGTTCAGCAAGCTTTCAGGAGCCAGGCCAAAGTCATTAGAGTTGCCATTTGTTGAGGAGCAGCTGTGACCAAAAGCTCTATCCCTCCCCAAAGCACAGAGCTACAAGCAGCTGCAAATTGTCAAGAACCGTCATTTTGACACCTGTCTGGACACCTGGAGAATCTGATGACTGGAGGTTTTCAAGATCACTGTACTCTTATGGAAGAAGACCTGCCACCCCCTACCTCCAGATGTCATGGCTGGTTACAAACCATTTGCTCTGATCTGTAATTGCTATGATGGAAATACATGTCTCTGAGTCAATTCTCtcataattatgttttctgGTTTAAAAGAGCTAACATAAGTGTATGCTTCATCCAGGGCGGTCCATTTATACatgacacatttgtttttgtaataaaacaaaactgaaaaagaaaagcatgctTTTCTAAGTGCAGTACTAGCATGAGAAACTGTCACACTCTAACAGGTCTGTGACTCCGTATACACTGGACACACTATAATGGGCCTACTTCCATATCAGAGAGAAACGGCCCACCCCATATGGCCATAGAGATTATTTACATTGGCAATAGTTCAGCTATAAGTCTCCTAAATAAATGGTCAGCCACTCGcctccaaaaaaagaaatgaaatgcCTGAATGTCAAATTTAAAGTCTCAGAATTTGCTTCCCCattaaatctttttaaaaa

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10898 FAAP24; fanconi anemia-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020675 True 3429 mRNA 0.43 4 29135329 29140819

Neighbor

gene id symbol gene type direction distance location
AMCG00020676 LOC107834818,LOC108165933 coding downstream 39206 29072306 ~ 29096123 (-)
AMCG00020677 NA coding downstream 64233 29059415 ~ 29071096 (-)
AMCG00020672 NA coding downstream 122034 29001771 ~ 29013295 (-)
AMCG00020669 cebpg coding downstream 330655 28804201 ~ 28804674 (-)
AMCG00020666 NA coding downstream 647458 28481482 ~ 28487871 (-)
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding upstream 79861 29220680 ~ 29221402 (-)
AMCG00020681 NA coding upstream 195885 29336704 ~ 29368396 (-)
AMCG00020682 NA coding upstream 277997 29418816 ~ 29457651 (-)
AMCG00020680 NA coding upstream 324056 29464875 ~ 29468021 (-)
AMCG00020686 NA coding upstream 346469 29487288 ~ 29504412 (-)
G64912 NA non-coding downstream 133696 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 276975 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 812165 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1714683 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1899007 27236083 ~ 27236322 (-)
G64991 LOC103376870 non-coding upstream 118738 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 744782 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 842294 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 985870 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1394473 30535292 ~ 30535896 (-)
G64882 NA other downstream 338373 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 807017 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 896255 28161602 ~ 28239074 (-)
G64811 NA other downstream 905682 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1885653 27246014 ~ 27249676 (-)
G65000 NA other upstream 240496 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 379372 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1308926 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1581964 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1659763 30800582 ~ 30808846 (-)

Expression


Co-expression Network