AMCG00020676 (LOC107834818,LOC108165933)


Basic Information

Item Value
gene id AMCG00020676
gene name LOC107834818,LOC108165933
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29072306 ~ 29096123 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020676
AGACACCGTAGTTGTAGTAGAATAAACATGGCAGCGTCTGATAGCGACGGCGAGGAGGATTTTGTTTCTTATGGAACTCCTTTAGAGCCCCTCGAAGAagatgAACCTATTAAAAAGCCGGTGCCCATACATGATCAGACGGTCAAGGATGAGAAGGGCAGGTACAAGCGTTTCCACGGAGCGTTCACCGGAGGCTTTTCAGCTGGTTACTTCAACACCGTGGGAACAAAAGAAGgaTGGACGCCTTCAGTGTTTGTTTCCTCGCGGCAGCAGAAGGCAGACAGACAAGCTGTCAGACCTGAAGACTTCATGGATGAAGAGgatcTTAGTGAACATGGAATTGCACCCAGGGAAATTCTAACCAGAGATGAGTTTTCATCTAAAAGGAAGGATGAAATCGGGGACAAAGCGCGCACTCTGGCATCCCTGTCTGCTCCCATCCCCGGAGACACTTTGCTGGAAGAACTCGTCACCCCAGCCAGGATCTCGGTTGGGGTTGAGTTGCTGATGAAGATGGGGTGGAAAGAAGGCCAGGGAGTGGGGCCCAGGGTTAAGAGGAAGCCTCAGAAGCAGAAAGCTGATCCCAGTGTGAGGATCTATGGATGTGCATTATCAACCAATGGATCAGAGAATTCTGAGCAGGACGAAGGTGATGACTACGCTCCCGAAAACGTGACATTTGCTCCGAAAGACCTCACCCCAATAGACTTCACCTCCAAAGATGACCTCCATGGGCTGGGCTACCGAGGGCTGAACCCACAACAGGCCTTGATGGGTGGTGCGAGAGGAGGCCACATAGACCTCTTCAATCTGGACTCTGACCGGGCCACCAGCCTGCTAGGGGGGGGCAAGCCAAGTCACAACAGGAGAGGAGGTGTCTCAGGACAGGCATTTGGGGTTGGGGCACTGGAGGAAGAGGACGATGACATCTACCACAGAGACTCACTCTCTCGATACGACACTGTGATCAAGGATGAGGAGCCAGGGGACGGGCTGTTTGGATGGACGGCCCCGCAGCAATACACGGGGAAGAAAAAGGGCTCTAATAAAGACGTTGCGTACATGGGGAAAATTCTGGAGGGTTTCACGCTGGCTTCCAAATCCACGTCTGCCAAAACAATATATCCCCCTCCTAACCTGCCCAGGGATTATCGCCCAGTCCACTACTTCCGCCCAGTCCTGGACTTGTCCAGTGCCAGCCCTCAGGTGGCACAGCTGCTGCAGGCGTCAGCGGGACACATGGCCCAGGATGACCAGCAGAAAGGAAGACACCAGCTGGATGCCTCCCAAAGGAGAAACCTGCTTGGGGAATCAACCATGGAAGGCCCCAGCTCTGTATTTGACCTCCTGGACAGCCAGGATAAGGAGCGCTTGGCGGGCATCAGGCAGGCAGCAGAGGCAAGGAAGGCATCAATGGTGGCgacagcggcagcagcagcgaAAACCTCCTCCCAGCAGGCCCTCTCCAACCGCTTCGTACCCCCCGCCACCCAGGATACTGCCCTCAGCGCCTGGGAGGGTGTCTCCACGGACAGCAGTCCCACATTTAGACCCTTCGAGAAGAACCCCGGGAAGCAGACGCGCTACGACAACTACATCACCAAGCTCAAACAGGGCCAGAAAGATGCCCTGGATTCCAGCCTGGATCCCCAGATGACTGAGTGGGAGCGCGGTCGCGAGAGGGATGAGTTCATTCGCTCTGCCATGCTTTACAAACCCACCAACTCCACCCTGGCCTGCAGGTTCACGCGCGGGAGACATGAGGATGACACAGACACGGTTGAAGTTCCGCGGGACCCGGAGAATGACGTTGGTGACAAAGAGGCAGCCGTGAAGATGAAGATGTTTGGGAAGCTGACGAGAGAGACATTCGAATGGCACCCCGACAAACTGCTCTGCAAGAGGTTTAACATTCCTGACCCCTACCCCGGGTCAGGAATCGTTGGACTCCCCAAGGTGAAGAGAGACAAATTCTCTGTGTTCAATTTCCTGACTGTGACAGAGAGCAGGCAGCCCGCAGCCCGGGCACTGGGAGGAGACTCGTCAGCACAGAGCCTGCCCACCACCTCCAAGGatGCCCCCAAGCCACCAGAGAACAGTAGGAAGTCCAGGTGGGATGTCTCTGCTCCCAGCACGGTGCCATTAGACCCCCTCAGTGAATTCCTCAGTGCGGCCAGGAATGAGGCGAGTGCAGGGGCTCAAGCAGAGAGCAAGCCAAACGCAGACATCCAGGCTGGTCCCACACAGAGCTCCGAGTCTTCAACACAGAtgaaggaggaagaagaggatgaggaggaagacAAAAGGCCACCCATGGACCTGTTCAAGGCCATCTTTGCCAGCTCTTCGGATGAGAAATCTTCATCGTCCTCTGAAGAGAGTGAGGCAGAAGAGGATGAACAACAAGCTGGGTCCCAGGACAAGCTCCCCAACAACTCTGAAGTTGCAACCGTTGCCCAACCTTTGCCCTCCCCCATCAGCGAAGGACAACAGCTGATTACTTCTTTGACAAAGgaggaaaaacacaagaagaaaTGCAAAGAGAAGCACAAAGCAAAAAAGGAACATAAACACAAGAAAGACAAGAAGCACAAGAAGAAGCACAAGAAACGCAAGCACAAGTccaagcagaagaagaagaaaactgaGGAGGCCAGCGACAGCTCAGACaatgacagtgacagtgatttGGGGGAGGAATCTGGAGCTTTGTCAACCGAAGACCTGTTAAGAAGGATGAAGAGTCTGCGTGGAAAGAAATGACTAACTTTTCCTTGAAGTGCCAGCACTGCAAAATGTCCCGTCTCCTCTATGAGGACATGTAGAGCGCAGTTGCCATGTAACCTCAGCTCTAATGAATGTTAATATCAGATGGTTTTGCTCCGTACCTTAATCAAAAACTCCACTTCCCTGTAAATAAAGTGTTATGTTTTGTCTCCATTCGTGACCTTAAGACTGAATTTACCAACTTTTTTCAAGTTTTCCAAAAGCAGCGAGGCAGTGACACTTCTTGAAAGCTGGAAGTTATTTTCTGAACACAACACGTTTTTCAAACCATCTGTTTCAAACACTAACAGATAATGGGAttctttttaatagttttgtggTGTCTATGTTGGCATTTTCTAGACAATTATCCACTTCATGGGCACATGTTTTTATGgctttttaaatggaattttGTCGGAAAGGTTAGACATGGAAGGCTGGAGAATGCCTTGCATAAAGAATGGGCACACCAGTAAGAGTGATGTTTGAGTGTTAACCGATACTTCAGCTTTTCATGAGGCCAGGAGGGGTAATAGGGAATAGCTATAAACAATTGTAAAGTGTTCAGCCCTTACAGCCAGTATTTATTAATGGAGATGGCATGCTGTATCTACCCAGGAAACAtcacaaaagtattttcttcCGAACCCCTTTAGTTCCAGCCTGTTATGTATGCACTCGGTAacattgtacacacacagaTTTTGTTAATGAAACTTAATGCAACAATTTTTTTCCTGTCTTGAAACTAAATTATTTCTTATGTTAGAATTAAAACTGGTTTATAAACAAGCATGTCATGTAAGGTATTCGGGgaattatacaataatattgCAGTAGTTGATCATacaaggtgtttttttgtttaatttgtcagcCTTTAATCTGCTTCATATATTTGATCTGCATTGACATTGAAAAGCTTTTCATCACAGCAGGCTTTCTTCAGGAAAAGTATTGgcaaacattttgttctcagtgATGAgcttttcatcattttaaaagttgatTCAATTTCAGGATTTACAGTTTTACTActgatttgaaaatatgaatgtgcaatacttatattaaataacaaatttgGAAGTAGTCtgattctaatttatttaacatcTAGGCCTAATGATTTGGGCTAATTACCATAGAAATCTATTGGCTAGCACTGTTAATAGAATGCTGCTGTTTATCACATTTTGCTTTCCAAATAAAAGTATGTTTCCACTTACAACTATACATCAGGGATTCTTGAAAgatgggactttttttttttcaaaataaaaatctcctATTAactatgtttaaaatgtataccaaCATCTTGGCTAGCAAACCATGTAAAGGAACAACCTCCTGAtgtataatttcaataaaaggtaaatgttttgatttttaataggATTTATGTCAACTCCACCAGACAAAATAAAA

Function

NR:

description
PREDICTED: G patch domain-containing protein 1-like

GO: NA

KEGG:

id description
K13123 GPATCH1; G patch domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020676 True 4200 mRNA 0.47 19 29072306 29096123

Neighbor

gene id symbol gene type direction distance location
AMCG00020677 NA coding downstream 1210 29059415 ~ 29071096 (-)
AMCG00020672 NA coding downstream 59011 29001771 ~ 29013295 (-)
AMCG00020669 cebpg coding downstream 267632 28804201 ~ 28804674 (-)
AMCG00020666 NA coding downstream 584435 28481482 ~ 28487871 (-)
AMCG00020664 kctd15,LOC107668486 coding downstream 621945 28431779 ~ 28450361 (-)
AMCG00020675 NA coding upstream 39206 29135329 ~ 29140819 (-)
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding upstream 124557 29220680 ~ 29221402 (-)
AMCG00020681 NA coding upstream 240581 29336704 ~ 29368396 (-)
AMCG00020682 NA coding upstream 322693 29418816 ~ 29457651 (-)
AMCG00020680 NA coding upstream 368752 29464875 ~ 29468021 (-)
G64912 NA non-coding downstream 70673 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 213952 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 749142 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1651660 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1835984 27236083 ~ 27236322 (-)
G64991 LOC103376870 non-coding upstream 163434 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 789478 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 886990 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 1030566 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1439169 30535292 ~ 30535896 (-)
G64882 NA other downstream 275350 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 743994 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 833232 28161602 ~ 28239074 (-)
G64811 NA other downstream 842659 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1822630 27246014 ~ 27249676 (-)
G65000 NA other upstream 285192 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 424068 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1353622 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1626660 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1704459 30800582 ~ 30808846 (-)

Expression


Co-expression Network