AMCG00020677


Basic Information

Item Value
gene id AMCG00020677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29059415 ~ 29071096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020677
CCTAAAGTGTGAATTGGCTGTAAACGGGTGCAGTGCCTCGTCCCCAGCGTTGCGACAGAAGCAGACGTGTTTTACGGTAATATTGCCATGGCAACCCAGGACGCCTGAACAAAGCCAACGTTTGAAAGCGGCTCCTTGCAGAGAAAAAGCAGATTCACCTTCACACTCCGCCGGTGAATACCGGCCACAGCGAGGACATGCCCTTATCAAACCGCAGCAGCGACCCCCTGTCTGTGCAAGAGGCCGCGgaagagcagcagcaggggAAGACGTCGGGCTGGGCGCATCAGCAGCTGTCCCGGATCCCCATTAAAGTTTTTAGAAGTCACACTGATGCCATCAGCAGTTGCCATTTCTGCTTTGAAGACAGTAAAATCCTTACCTGCTCCTATGACAAAACTGCAATCCTCTGGGATGCTGAAAGTGGAGATCCTGTACTGGCCTTTGAGGGGGGACACTCAGCGCCAATCGTTGAATGCGCTTTGACTCCTGACAACAAAAGTGCTCGATCCCCTGATGACCATTTAAAAGACTTACCAATGCAAGCCACAGTGCTTATGCCCATTCAAGCAAAGTGGAAGGCAGTTCATGATGGCCTCCTAACGTCATGTAGCGTGTCTCTGGATGGAAAGTATGTGGCGTCTGCCTCTGATATGGAGAACGCTCTCTACGTTACCTGTGCTGAAACTGGTGAAAAGGTCTTTCATATCAAAGACCATCACAAATCCACCGTGACAAGATGTCGATTTGATCCAGGCAGCCAGCGTGTGGCCACTGTCTCGGCGGACAAGACCATCAAACTTTGGGATCTTGTTGCACGCAGGACGACCCTTTCAATAAACAGCACTCACTCCAATGTGATCTCCAACTGCTGTTTCACCAGCAATGGGCGGCACTTGTGCACGGCATCGTGGGATAAAACTTTACAGCTATGGGACATCCAGACAGGGCAGTTTCGCTCTCGGGGAGGAGTGAAGCTCCACAAAGGGCATGAAGGCAACATCAGCTCCAGTGTTTTCTCTCAGGACTCATCTCTCCTCGTATCGGGCGCCTGTGACAGGAATGTGACTGTCTGGGACATGGAAGGACTTTGTAAAAAACTGGTTCTCAAGGGACATGTGGACTGGGTAATGGATGTTGCAATCAGCGCTGACAAAAAATGGGTTGCTTCAGGCTCTAAGGACACCACGTTGAGAATGTGGAACATCGAACACTCGGACCACATTCCAGCAGTCATTGAAACAAGGAAGGCCGCAGGATTTCAAATAATCAAGTGTGAACTGTGCAAAAAGCCTTTCTCCATCACCCAGATGGAGAATTCCGAGTTCATTTCCAAGTGTGTCTTCTGTCGACTGATGGCTCCTTCCCGAAATTACCTTCCAGCCCCACCTGCTCTTTGACCTCACCTGGGGAGCTGCAGACACACTGATGGGACTTCAGTATAGGACATGAAGCTGTGTGATCTGTTGTCTCTTCTGATGCTTATGTATTGCAATTGCCTCGCAGTTTGTATGATTCGATAAGTAATTCATAATAATTGTTCATTACACACCTTGGTCAAAATACAGTGAAGTTCTTACTTATTATTATCTCTAGACTTGcacttttctttcttgaatTGCCTGCAATTCTAATCTAATGGGCTTGTTCTGCTGATAAACTTGTATTAGGCCTACGTGATATATTCCATTTAGCAATTTATGAGAgacttgttttctgttgttttaaatgtatttatatatcatatgtattattgtagCCTATATTtatcataacatttaattttaaatgttattgttttatggaGAATTTATAGAAAACTAATAttgtctttaattgttttacgGACAAACTCGCAGTAAGGCGCATGTGCAGAGCATTGGTAAGACTAAACCTGAGCATAATAACTTGTAATGTAATCTAACGCATTGAGCCGCTTTTCTGCCATGTCCAATGAGAGTATTACGtgctgaattttttttttttaacgaatACGATAAACCAGTCTTTTTGAAACAAATAAGTTCAATATTTGTCAAAGGCCAAAGCTCCAGACATCAAAATGctgtctataaatatttgtatcgagatcaaaacaaataaatcaaaacataacgCTACTTCAACCTTTCatgataactttttttttcaccttgAACGGGAGCGGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGGGTTCGAATCCCAGCGGTGccttttgtagttttgtttcatttttgtattagtatttaaaAGACGG

Function

GO: NA

KEGG:

id description
K24757 WDR88; WD repeat-containing protein 88

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020677 True 2282 mRNA 0.44 11 29059415 29071096

Neighbor

gene id symbol gene type direction distance location
AMCG00020672 NA coding downstream 46120 29001771 ~ 29013295 (-)
AMCG00020669 cebpg coding downstream 254741 28804201 ~ 28804674 (-)
AMCG00020666 NA coding downstream 571544 28481482 ~ 28487871 (-)
AMCG00020664 kctd15,LOC107668486 coding downstream 609054 28431779 ~ 28450361 (-)
AMCG00020662 NA coding downstream 717238 28328985 ~ 28342177 (-)
AMCG00020676 LOC107834818,LOC108165933 coding upstream 1210 29072306 ~ 29096123 (-)
AMCG00020675 NA coding upstream 64233 29135329 ~ 29140819 (-)
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding upstream 149584 29220680 ~ 29221402 (-)
AMCG00020681 NA coding upstream 265608 29336704 ~ 29368396 (-)
AMCG00020682 NA coding upstream 347720 29418816 ~ 29457651 (-)
G64912 NA non-coding downstream 57782 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 201061 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 736251 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1638769 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1823093 27236083 ~ 27236322 (-)
G64991 LOC103376870 non-coding upstream 188461 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 814505 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 912017 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 1055593 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1464196 30535292 ~ 30535896 (-)
G64882 NA other downstream 262459 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 731103 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 820341 28161602 ~ 28239074 (-)
G64811 NA other downstream 829768 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1809739 27246014 ~ 27249676 (-)
G65000 NA other upstream 310219 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 449095 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1378649 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1651687 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1729486 30800582 ~ 30808846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10167646_10169639 NA coding CI01000304 null 10166187 ~ 10169639 (-)
rainbow trout (Oncorhynchus mykiss) trnat-agu-153 NA coding NC_048593.1 CM023247.2 28591552 ~ 28591625 (+)
eurasian perch (Perca fluviatilis) trnat-agu_7 NA coding NC_053127.1 CM020924.1 17527235 ~ 17527308 (+)
tiger barb (Puntius tetrazona) G104976 NA non-coding NC_056713.1 CM032082.1 9393877 ~ 9394208 (-)
tiger barb (Puntius tetrazona) trnav-aac_5 NA coding NC_056702.1 CM032071.1 27134799 ~ 27134871 (+)
mexican tetra (Astyanax mexicanus) trnat-agu_46 NA coding NW_019172925.1 APWO02000034.1 729125 ~ 729198 (+)