AMCG00020678 (zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404)


Basic Information

Item Value
gene id AMCG00020678
gene name zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29220680 ~ 29221402 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020678
ATGAGCTGTTCTCACACAGAGTCTGAAGAGAAGCCATCAAATGACGAGCTGGAGTGCAAAATCTGCTATCAGAGGTTCAACGTGCACAACCGCAAACCCAAAATCCTAGACTGCCTTCACCGTGTGTGTGCTCGCTGTCTCAACAAGATCTTGGACATAGGAGATGCGACTCACTGCATCAGCTGCCCTTTCTGCCGCCACGAGACTGAGGTCTCGGAGTACGAGGTGGCCGGTCTACCTGATGACTCCAACATCATGTCCAAACTGGCCACCAGGGACAAGTCCTGGAGTTCGGACAGCAAAGAGGTGGTGCTGACGCCAAAAAACCTCTCTTCCTCCAGCCCTTCCCATGGCTCCTCCAACTGCCTGGTCATCACCATCATGGAGGTACAGAGAGACTCCCCCAGGACACCCAGCCGCAACACCAGCTCGGATTACTATGCAGAACAAAGCCTGGATTCCATATCCGTCAGCTCTCAGAATCAAATTGACCAAGATCTTTTCTCCAAGTTCTGTAACCATGTGCCCAGAATATTGGTCTGGCTTCTGGGATTCTTCTACTTTGGCTCACTACCACTTGGGATTTACCTGCTGGTGATACAGAAAGTGACCCTGGGgattgtgtgtgtcagtctggtGCCTTCCAGCCTGACTGTGTGTCTGGTGTATGGATTCTGCCAATGTCTGTGCCAGGGCATGTGTGACTGTTCCTCTAGAAGCTGA

Function

symbol description
zgc:165481 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF182-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020678 True 723 mRNA 0.52 1 29220680 29221402

Neighbor

gene id symbol gene type direction distance location
AMCG00020675 NA coding downstream 79861 29135329 ~ 29140819 (-)
AMCG00020676 LOC107834818,LOC108165933 coding downstream 124557 29072306 ~ 29096123 (-)
AMCG00020677 NA coding downstream 149584 29059415 ~ 29071096 (-)
AMCG00020672 NA coding downstream 207385 29001771 ~ 29013295 (-)
AMCG00020669 cebpg coding downstream 416006 28804201 ~ 28804674 (-)
AMCG00020681 NA coding upstream 115302 29336704 ~ 29368396 (-)
AMCG00020682 NA coding upstream 197414 29418816 ~ 29457651 (-)
AMCG00020680 NA coding upstream 243473 29464875 ~ 29468021 (-)
AMCG00020686 NA coding upstream 265886 29487288 ~ 29504412 (-)
AMCG00020692 NA coding upstream 906817 30128219 ~ 30145527 (-)
G64912 NA non-coding downstream 219047 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 362326 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 897516 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1800034 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 1984358 27236083 ~ 27236322 (-)
G64991 LOC103376870 non-coding upstream 38155 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 664199 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 761711 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 905287 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1313890 30535292 ~ 30535896 (-)
G64882 NA other downstream 423724 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 892368 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 981606 28161602 ~ 28239074 (-)
G64811 NA other downstream 991033 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 1971004 27246014 ~ 27249676 (-)
G65000 NA other upstream 159913 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 298789 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1228343 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1501381 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1579180 30800582 ~ 30808846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_10599580_10600367 NA coding CI01000026 null 10599203 ~ 10600367 (-)