AMCG00020681


Basic Information

Item Value
gene id AMCG00020681
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29336704 ~ 29368396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020681
ATGTACATACATCATGGTATCCATGATTTAATCTTTAAGTATGTGGGAACCATTGAAGCAAGTCAGgATGCTGCTTTcaataaaaccacaagaagTCTACAGGACCTCCAGCAAAAAGACTTGGGTATTAAATCTGAATTGAGTTTCAATATCCCTCGGGCCAAGCGGGAGCTGAGCCAGCTGAACCGCTGCACCTCCCCCCAACACAAGCTACTGTGTCTACGCAAGGTGGCCCTCACCATCATGCAGTCTCCCAGCTCCCGAGTTAACATTGAGGCAATGTGTGCTGACGATCTCCTGTCTGTTCTCCTGTATTTATTAGTGAAAACAGAAATTCCCAATTGGATGGCTAACCTCAGCTACATCAAGAACTTCCGTTTCTGTCATTCCTTCAAAGACGAACTGAGTTACTGCCTGACGTCGTTTGAGGCTGCAGTGGAGTATGTCAGCCAGGGCAACCTCTCCCAGGGCCAAACGGGGGGAGGTGGACTGAACGACAAGCACATCGCCAATGGGTGTGAGGAGGAGGTGAGGAGACTCCTGAGTGAGGGAGAAAGTGAAGAGGAGGGAGTAGAGATGTGCCACCCACTCTGCTCCTGTGACCGCTGCGAGAGACACACGTCCGGGAGGCTGAATGACCCATCCATTGTCACTCCGTTTTCCAGAGATGACCGGGGCTACACACCACTCCATGTTGCTGCTATTTGTGGTCAGTCTTTATTGATAGACCTGCTGGTGTCTAAGGGAGCATTGGTCAATGCCACCGACTACCACGCCCTCACCCCCCTGCACATGTCCTGCCAGAAGGGATACCAGGGAGTAACGTTGCTGCTTCTGCACTACAGAGCCAGCACTGACATCCAGGACAACAACGGCAACACACCCCTTCACTTGGCTTGCATGTATGGACACGAAGACTGCGTGAAGGCACTCGTCTACTACGACGTCCATTCCTGCCAGCTGGACATCCAGAACGACAAGGGAGACACCCCCTTGCACATCGCCTCTCGCTGGGGGTACGAGAGCATCATTGAGGTGCTGCTGGAGAATGGAGCCAGCACGGCCATCCACAATAAGGCCAAGGACACACCCTTCCAGTGTGCCCTCAACTCCAGGGTCTTGTCTCTGCTGGAGCTGACACACAATGGCTTTGACCGAAGACAGAGCAGCAGTGAGtcTCCCAACAGGTCCCCCCAGCCCTCGACAGAGACAAGCAGCCGTCGCTCTTCCCTCTCCAGCTTATCTTCCCTCAACACTGACATCAAACCAGAGAGCAACAGAGGGAGACACAAAGAGGTGGAGAAACTGCTGCGTGCTGCTGCTGATGGAGACGTAGAGATGGTGCGGTATCTGTTGGAGTGGCTGGATGAGGAGCctgaggatgaggaggagggcGCCGGGGCTCTGCTGAAGCCTGACTTCTGTCATCCGCTGTGCCAGTGCCCCAAGTGTGAGCCCACACAAAAGAGGCTCGCTAGCTTGCAGGTGAACGGGCTAGGCGTGAATAGCAGCAACCAAGACGGATTCACTCCTTTGCACGTGGCTGCTCTCCACGGGCACGCCCCCCTGGTGGCCCTGCTCACCCGTCGTGGGGCCAACGTGAATGCCAGGAACGGCCAGAGTGCCACCCCTCTGCACCTCGCCTGCCAGAACAGCCACCTACAGGTGGTGTCCTCTCTATTGGAGTGTAATGCCAAGCTGAACAAGAAGGACCACTTCGGGAACACGCCACTGATCCACGCCTGTCTTCGTGGACACCAGGACACAGCTTCCATCTTATTGAAGAGCGGTGCCTCGGTGAACCTTGCCAACAATCAAGGTAACACAGCACTGCATGAGGCAGTAAGGGGGGGGCACCTGGCACTGGTGGACTTGTTGGTCCATGCGGGGGCCTCTGTCCACCTGAGAAACAAGCGCCAGAGAACACCCCTCGACTGTGCCCAGGAGATGGGTGGCAAGAACACAGAGATTGTGAAGATTCTTCAGAAGGCAACCTCTTATTCGCCTCATGAGAACCCTGCAAAACTGCCAACACCTACAAAGGCACAGCCAGGGAAGACATTATCCTTCTCAAAGCAGATTAGAGCGCTGGATGAGTCACACAGCAGACGGATGGAACAGGTCCAGTCCATTAGCAGaggCCCAAAGTCCAGGAAGCCCATTCCCAGAGAGATGAGCATGCCTTCATTTGACTCTGGCCTCTGTCAGTCTCCTGCCAGTCGGTCGGAGAAGTGCAAGCTGAGGCGGGCCGAGACCCTGGAACGGAGTGGCCCTCTCACCCCCCCCTCTGAAGATCCCGACGAGGTATGGGGTGAGGAGGTGGATGCCCCCCGGAGTAAGACCCTGAGTCGGCGGCACACAGTAATAATGGAGAGCTCCCCTCCAGGACAGGTTGATGACAACCAACACGCCAACATCGAGCAGTCCACAACCCCCACCGACCCCTCCGATCCGACCTTTGAACTCAACGATGGTGCCCTGGGCGACAGCAGGGAAGCTGCCTCCCCACAGCACCACGCAAAGCCCAGGGGCAATGGAATAGATATAATTCCCAGAGAAATGGACGAGCTGGCTTCGAAAACtgtgtgaaacaaaatataataattaaaaaaaaacaaaaaaaacgtttgGACTGTAACACTGGAGATGGTGTTTGCAGCCCTGTGACTTTGCTACCTTGCAAACCGGTCAGGATAGGGCCGGACCGGACACCTCTGGTCAGCTTAACAAGGGCAGTCTAGtccaaaatgaaagcaaaagcTGTAAACGAACGTCAGCACATGGGTGATGGATGTCTTTCTTGGAAAAGAGACGCTGAGATTAACTATACTGGTTGTATCAAAAGTAGATGTTTACtgttaacaattatatatatatacacacacacacacaccgttaTATAGGGAGCATTTGTGCATCTgatttaaagcacttttttaTTCGTCATATCAAGCCTCTAAAAAGGGATGTGCAACTTTCAAAGAGCTGAttctaagtgtgtgtgtgtttaagttagttttatttttttcttaaaagcagAAATATTCAAGGTGTTGTATCTGTGATGTAGGTTCACATCCTGACTTGCACATATGGAGGTATTTCCTACATGAATGTTGGAAGTGTTCTCCCAGACTAGAACTTAACTGGACATCTGGAGTCCACTATGTAGTACTCAAAGACCTCAGCATTTCACCAGATTAGAAAGCAGTGTATACATAACAACacaatatttcttattttgataTTCCCATTTGTTTTTGGGACTGATATTTTACATCTGTGTTATAATACTGCTGTGAAGGACTGGCTTCCAAGGGTATGCCCCGCCTCGTGCCCTGTGTCCACTGGGTTAGGCTCCGGCTCACCGCAGCTCTGTGCTGGATAAAGCCATTATTGAAGATGGATGGGTGCATATGATATTGAAGTCGTGGATTCTCAAAGCAGCTGGTACCTATAGTCGATTGCGTCATGCATCATATAGGCTTTTAtgttacgtttttttttttttctcctgaaggATGAAATGCAATACTGGTCTTGTTATTACAAGTCCAAAAAAAGCCCCCTGAAATGAAACTGGACTTTTCTTCTGACATTTATGCCAAATAGTAAGAGCCTGGTACAACAGGTCCCAGTAAGTATTCATGTTAAGTGTCTGTTCTCTTTGTTCAAGTACAACAAACAAGCTTtgctactctctctctctctccaatttGCTTGTTTCTGTCTTGTCTAGCTTCAACTCACGTAGGCTACTGTGCAAGCAAATCAATTGTCCCTAGTTCCTTTCCAATTAACACTCCTCTCTGTAAAATGTCCTTCTCTGTTGCACTTTTCTcacttgaaaaaatatattcacactAGACTTGGTGGAAAAAGCCAGCTGAGATCTGCATTTTACTTTCtggcttttgttttcatctccTCGCAATACATTGTAACAAGTATGTGCTTGAACTGGCCAAGTCATGTATAATAAGCTTACATACAATTGGCATTCAAATGAAACAGTGAACCTGCCAAGGAACCACACTGGTGATGTGGGCAGGGTTTGCTGTCCTAAAAATAGGAGAGATCTTTATATGCAGTTGTGTGGTTTCAAAATGGCAAATAAAGTCTGGATCACCAGCTTCTTTTGGTACCATTGAATTTCCCTGCACCAAATGGAAATCCGCTTTGAATtggttatttttatacattatacGATTTTAgttattgttgtaattgttggtttgttagaaacattttttttttttccgattGCAGTGAATGTGCCTTAtttaatttgtgccaaaatatAACAGATTTAATAAACTGGTGAGTGCAACGATAACCAGCTACCTACATAACTTCCTTGTTCTTCAAATCTCGATGAGACTTGGCTGAGACCAAGAATCCTTCATGTAATAGAAATATGCAGCTTTCTAGTAAGTATATGTTACGACATTCAAACTCCATGCTGCACAGAACAATGGCAATTATTTATCTTGAGTAACCATTGTTTCAGGGCTGCCTTAACTATCATCAGAGGATCCTCGATTTCAGTAATCATATCGTCCCGCAAAGGACTACATGTAAATCCTGACATCATTCATGCCAGAAGGTGG

Function

GO: NA

KEGG:

id description
K20175 ANKRD27; ankyrin repeat domain-containing protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020681 True 4610 mRNA 0.48 22 29336704 29368396

Neighbor

gene id symbol gene type direction distance location
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding downstream 115302 29220680 ~ 29221402 (-)
AMCG00020675 NA coding downstream 195885 29135329 ~ 29140819 (-)
AMCG00020676 LOC107834818,LOC108165933 coding downstream 240581 29072306 ~ 29096123 (-)
AMCG00020677 NA coding downstream 265608 29059415 ~ 29071096 (-)
AMCG00020672 NA coding downstream 323409 29001771 ~ 29013295 (-)
AMCG00020682 NA coding upstream 50420 29418816 ~ 29457651 (-)
AMCG00020680 NA coding upstream 96479 29464875 ~ 29468021 (-)
AMCG00020686 NA coding upstream 118892 29487288 ~ 29504412 (-)
AMCG00020692 NA coding upstream 759823 30128219 ~ 30145527 (-)
AMCG00020693 NA coding upstream 996624 30365020 ~ 30420634 (-)
G64991 LOC103376870 non-coding downstream 22645 29259557 ~ 29314059 (-)
G64912 NA non-coding downstream 335071 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 478350 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 1013540 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1916058 27420366 ~ 27420646 (-)
G65023 NA non-coding upstream 517205 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 614717 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 758293 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1166896 30535292 ~ 30535896 (-)
G65061 NA non-coding upstream 1248484 30616880 ~ 30617134 (-)
G64882 NA other downstream 539748 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 1008392 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 1097630 28161602 ~ 28239074 (-)
G64811 NA other downstream 1107057 28226535 ~ 28229647 (-)
AMCG00020639 LOC107583916 other downstream 2087028 27246014 ~ 27249676 (-)
G65000 NA other upstream 12919 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 151795 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 1081349 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1354387 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1432186 30800582 ~ 30808846 (-)

Expression


Co-expression Network