AMCG00020682


Basic Information

Item Value
gene id AMCG00020682
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29418816 ~ 29457651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020682
GATTCTGAAGGGAGTTGGAGATGAAGTAAAGAATCCAAAGGAGTATGATGATTTATGGGTCAAGATGAACCTTTTCTACCATCAAGTGAACCAGGATGTTCAAAAGATTACACCGACATCACTGGAGAAAGGGCAGAGCTGGTGCCGGGCCTTTGTGGAATCCCTCTTTTTCAGCACAGAGGGGTACCATGTGATGTGCTTCCTGGTCGACTATGCAGAGCACATCATTGTGAGATCTGAAGAtattcGAGCTCCACTAGAGAAATTTCTTCATCTGCCCTTTTTGGCTAAGAAGTTCAGGCTTGCTCGTGTCCAGCCAGTGACTCTGCTCGTCGACCTCTGTAATGAGAAAGCTGAACTAATCCCTGCAACTTGCTGGGACAGTTCTGCTGTGCAGTATTTCCAAACTCTTGCAGCAGATACCACCCTCACTGAGGCTGTGCAGTGTGGTTTAAAAGGGGACAGTTTGGCTGTTGACCTTTATATGACTATCAAGAATGAAAAGATATGTGTTAATGATGACTTGGTTAATAAAAAGTATGCATGCTTCTCATCAATGGAGAAAACCCTGGTCAGCCCCATACCACATAGTGGTGAAGGGACTCCAGTGTTGGTGTCCTGCAGCATCCTCCCCTCAGTTGACTGGAGTAGTCTGCCCCCAAAACACATGCCTGTGTCAGCACTGATTCCAGGCATTGTGCAAGAGAGAGACCTCCCTCAAGAGGAACAAGttacTGTGAACACAAAGCCTGTGGATTTGGTAGTACAGGAAAAGCCTAATGAAATGGCAACCGTTCCACTTAAAGACTGTGATTCGCAGTGTCCTCTGTCTGAATCGGAGCCAAAAACAAATGATGGACTGGATAATTCACAGGAAAACGTGGAAGACATCAGTGACAAGACTGTGATCAGTCCACCTATTGAGATGATAGAAGAAATGCATGAATTACGTATGGATGATGATGAGCCACCGGTCCTCCACTCTTTCCACTCAAGTGACCTCTCTGAATATCTGAGGCAGGGAGCAGGCTGCACTGCTCTGCCGGACTTTGTTGATGAGCTTTCCTCTGTCAGGTTGTTACAGTTTCTGAACCCTGATCCTCTCAACCCAGAAAGTGAATCAGTGGATGTGACGACCATCCCCTGTGAGCCCCATGGGAGTGGCATACTGGTACATTCTGCCATGGCCATTGATCCCTTCACAAGCCTGACAAGGGCCCCTATCAGCGAGAATCTCAGAAAGGCTCTCTTGAGGCAGAAATTCAAAGGCCCCAGCCTAGCCCAGGCGTACAGTTGGCCTGCTGTGGCACGAGGCTGTGACACGGTGCTGATCTCGCACAACGGGGAGGATCCACTCACCTATATTCCTCCTTTCCTCACCTACCTGCAACTGTCCTCCCTGCAAACCACTCTGCCTTCAAGGACTGGGCCCATAGCAGTGGTCCTCTGTCCAGGATGGGAGAAGGCACAGATCGTGTTTGACATGCTGGAGGAGAACACTGTGTCTCGCCCTCTTAACCCAATGCTGATCTTAGTGATTGTTACCACACCTTTCAGCCTGGTCCGGCTCTTCACTTTCCACTGCTTCCTCTTCCTCAGGCTGTGCCACCTTGTGTTCGATGAGGTGGATGTGTTGTTTTCCCGTGCTCCAGAGGAAATGGCAGCTATACTGCAGCACTTCAGGAAAGCCACCACCTCGGAGGAGAGGGTATCCTCTCCCCAGCAGATCATTGCAGTTGGGAACCACTGGAGTAGGCCGATTGAGAGCCTGGTGAAGGACTACATGACTGATCCCTGTGTTATCATCACTGTAATGGACGAGGCAGCCCTGTATGGCAATGTGCACCAGGTGATTCTGCTTTGTCTGGACTGCACCAAGATCTCTGTACTGCTCAGTGCATTGGACTTCATTCCTGAGGTTTGCCAGAAGACGTTAATCTTCACTAACACTGCACAAGAAGTAGAAAATGTTTATAAGGCTGTGAGCAACACTTCATCATTTTGCATGAAGGCTCACGAGGGCCTGACATACCAGTTTGACTTTGTCATCGAACAGTGGAAGAAAGAGATGGGCCCAGGCACACACATTATCCTGGTTTTGACCAATGACTGTATGAAGGCCTTGGGGATAATGGATGCCACTTGTGTAGTGCACTATGGGTTTCCTAGCTCTCCAAAGCTGTTTGGAAGCCGCTTGTGTAGCATGTTGCATAACTTTCACAACCTGACGGACAAGGACCCTGGGCAAAAGCCACCCCGGATGGCCAAATCAGTGCTGCTGCTTTCTGAGAGGAATGCCCGGCATGCTACTGGAGTGCTGCGGTATTTTGAACGTTCAGAGGCCACCCTGCCACCTGAACTGAAGCACTTTGCGCAGGGAGTGTTGGAAGCCAAGGAGGAGCAGAAATCTGACAGACCACTCTGCCCTTATCTGAAAAGCTTTGGTTTTTGCAGGGAAAGAAGCATCTGTCCAGACCGACACAGACTTAGTCCTAAAGAGGAGAACATGCATCACTCAAACATTAGTTGTATATCGGTTCTGCCATTGTATATCAAGAATGCTTCCTGCTTCTTTGGACGTATAGTGAATAGGAAGGGGGACTGCTATGAGAGTCTAGCAGTGGAGATGGCAGAGTACTATGAGAGCCACAAAGTGAATGCAAAAGTTTTGGAGACAGGCGAGCTTTATGGGATACAGGAAGAGAGTGCGTACCACAGCTTCCTGGATGAGGGCCGCACTCAGGATGTGAAGGCCCATCAGCTGCTGGTGCTGCCCAGCCAGTTCCATAGCCTCCCTCCGCAGGCTGTGGAGTTCATTGTGTGCAGAGTGAAGCCCATAGACAATGAGATGGAGTGGAATCCAAAGGTCAGCAGACGCATAAGTCTGAAGATTAAAGGCGTTCTACATGAAGCTAAAGTTGCTCTGTGCCTGGAAAACACAGTTTGGGTTGATCCAATGGTCCGGGTCACAAGGTTGCCAGGGCTAAAGACTTATGTCAATGAATACAACGTTCGCTCAGAGATCCTGGCCACTGGCATGGGGACTGACAACCCAGGGCATGTGGAGCACCTGAAACAGCTGTGTCCGGACAGGGGTTTCACCAGCACAGAGCGGCCCACTATGCAGGACACATATAATCCCGAACTCAAGTGGTTTCAGAGTGAAGACTGTgttgtattaaacattaaactaaaaAATCCCACAGCACAGGAATATGTTTTTTGCCGTGACAGAGTAACCTACAGTGCCTACGTGGGTGACAAATATTACTATGCAAACCTAGAATTGAATGACAATATTGTAGAAGAAAAGTGCCGTTGTGAGATCAGTTGTAACGAGCCAGTGATGATTCTGGTCAAAGAGAAGAAGGGGGTCTGGAAGAAGCTGCTGAAACACAAggcaggcttttattttttttta

Function

GO: NA

KEGG:

id description
K18409 TDRD12; ATP-dependent RNA helicase TDRD12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020682 True 3421 mRNA 0.49 27 29418816 29457651

Neighbor

gene id symbol gene type direction distance location
AMCG00020681 NA coding downstream 50420 29336704 ~ 29368396 (-)
AMCG00020678 zgc:165481,LOC107657136,LOC107696720,LOC107554618,LOC107551474,LOC108432404 coding downstream 197414 29220680 ~ 29221402 (-)
AMCG00020675 NA coding downstream 277997 29135329 ~ 29140819 (-)
AMCG00020676 LOC107834818,LOC108165933 coding downstream 322693 29072306 ~ 29096123 (-)
AMCG00020677 NA coding downstream 347720 29059415 ~ 29071096 (-)
AMCG00020680 NA coding upstream 7224 29464875 ~ 29468021 (-)
AMCG00020686 NA coding upstream 29637 29487288 ~ 29504412 (-)
AMCG00020692 NA coding upstream 670568 30128219 ~ 30145527 (-)
AMCG00020693 NA coding upstream 907369 30365020 ~ 30420634 (-)
AMCG00020699 NA coding upstream 1300475 30758126 ~ 30760083 (-)
G64991 LOC103376870 non-coding downstream 104757 29259557 ~ 29314059 (-)
G64912 NA non-coding downstream 417183 28996392 ~ 29001633 (-)
G64886 NA non-coding downstream 560462 28857989 ~ 28858354 (-)
G64847 NA non-coding downstream 1095652 28316769 ~ 28323164 (-)
G64745 NA non-coding downstream 1998170 27420366 ~ 27420646 (-)
G65023 NA non-coding upstream 427950 29885601 ~ 29885899 (-)
G65033 NA non-coding upstream 525462 29983113 ~ 29983365 (-)
G65035 wwox,LOC107555694,LOC107742620,LOC107669551 non-coding upstream 669038 30126689 ~ 30390868 (-)
G65050 NA non-coding upstream 1077641 30535292 ~ 30535896 (-)
G65061 NA non-coding upstream 1159229 30616880 ~ 30617134 (-)
G65000 NA other downstream 13180 29381315 ~ 29405636 (-)
G64882 NA other downstream 621860 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 1090504 28325037 ~ 28328312 (-)
AMCG00020657 NA other downstream 1179742 28161602 ~ 28239074 (-)
G64811 NA other downstream 1189169 28226535 ~ 28229647 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 62540 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 992094 30449745 ~ 30531136 (-)
AMCG00020700 NA other upstream 1265132 30722783 ~ 30737976 (-)
AMCG00020702 NA other upstream 1342931 30800582 ~ 30808846 (-)
AMCG00020713 NA other upstream 1908012 31365663 ~ 31412823 (-)

Expression


Co-expression Network