AMCG00020700


Basic Information

Item Value
gene id AMCG00020700
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30722783 ~ 30737976 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020700
ATGCCAGTGGCTAATCGGACTGTCAATCATCCGCGGTGTGCCCGCACTTCCGGCTTTGCGCACCGCAGTGCAGGGATGCATTCAGACCTGTCTCCTCACTTGCACACAGAGGAATGCAATGTGCTGATTGCTCAGCTCAAGCAGTGCCACAAGGAGCACAACGTCCTTAAGTTTTTTGGCACTTGTAATGATTTTGATCGGGCCATGCGCGGTTGCTTGAAGAAGGAGctggCGCCCCCGCTATTGCAGAGGGACTGGAGGCGGGGAGACAGTCCCAGGAGCAGCTCTACCCCGACAGCG
>TU81391
CCGCACTTCCGGCTTTGCGCACCGCAGTGCAGGGTGAAGTCCTGCAACAGAGCGGGTGGTTGTCAGTCAAAGATCAACTCAAATTGACAAACCTACACAAACAGAGCGATCAAACCTTAACTCAGGATGCATTCAGACCTGTCTCCTCACTTGCACACAGAGGAATGCAATGTGCTGATTGCTCAGCTCAAGCAGTGCCACAAGGAGCACAACGTCCTTAAGTTTTTTGGCACTTGTAATGATTTTGATCGGGCCATGCGCGGTTGCTTGAAGAAGGAGTACCAAGAAAAGAGAACCAAGAGCAGAATACACGCACAAGAGATGCAACAAAAACTGAGCCATCCACCCAAACCTATAGAAAGCTAAAGTGTGACTTTCCTTGGGGCTGGTTCTGTCATCAATGGCAGAATTGTTAACATCGATCATAAAGACTCTTGACACACCGTGGAAGCACTGGGCAGTTGGCTGACAGCTGTGGTTGAAAGACTGATTTCTTGTGAAAAGCAGTGTTTAATatcaggaacaaaacaaaaaaaagaacactgaGCATTTACTGAAGAAATGAGAGCAGGTGCCATTCTTTTTCTTGAAGGTCTTTTACTGACAGTTGTCTTTAACAACACAGTTTAAGAATATTTGAGAATTATGAAGTTTTGCTTTGAAAGAATGTACCTGAAGGAAGAAAGAACATGTGCTGTAGTTCTGGGAAACTTACATTTTGGGGGATATGTTTCTGTTCctcttcatttaatttgtttgtaataaagTGATTGACA
>TU81392
CCGCACTTCCGGCTTTGCGCACCGCAGTGCAGGGTGAAGTAAGTTACAGTGTTGCTAAAATGTTTACAGTCGACCTATTTACTAGTGCGACATGTGCAACGACATAGTTCCGCATTTACGGTTAACATTCAAAATGACCAGAATGTAAAATTGTAACTTTCAGTGCAACAACAGAGTGAGGTCCTGCAACAGAGCGGGTGGTTGTCAGTCAAAGATCAACTCAAATTGACAAACCTACACAAACAGAGCGATCAAACCTTAACTCAGGATGCATTCAGACCTGTCTCCTCACTTGCACACAGAGGAATGCAATGTGCTGATTGCTCAGCTCAAGCAGTGCCACAAGGAGCACAACGTCCTTAAGTTTTTTGGCACTTGTAATGATTTTGATCGGGCCATGCGCGGTTGCTTGAAGAAGGAGTACCAAGAAAAGAGAACCAAGAGCAGAATACACGCACAAGAGATGCAACAAAAACTGAGCCATCCACCCAAACCTATAGAAAGCTAAAGTGTGACTTTCCTTGGGGCTGGTTCTGTCATCAATGGCAGAATTGTTAACATCGATCATAAAGACTCTTGACACACCGTGGAAGCACTGGGCAGTTGGCTGACAGCTGTGGTTGAAAGACTGATTTCTTGTGAAAAGCAGTGTTTAATatcaggaacaaaacaaaaaaaagaacactgaGCATTTACTGAAGAAATGAGAGCAGGTGCCATTCTTTTTCTTGAAGGTCTTTTACTGACAGTTGTCTTTAACAACACAGTTTAAGAATATTTGAGAATTATGAAGTTTTGCTTTGAAAGAATGTACCTGAAGGAAGAAAGAACATGTGCTGTAGTTCTGGGAAACTTACATTTTGGGGGATATGTTTCTGTTCctcttcatttaatttgtttgtaataaagTGATTGACA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020700 False 300 mRNA 0.57 4 30722783 30737976
TU81391 False 776 lncRNA 0.42 5 30730850 30737935
TU81392 True 918 lncRNA 0.41 5 30730850 30737935

Neighbor

gene id symbol gene type direction distance location
AMCG00020693 NA coding downstream 302149 30365020 ~ 30420634 (-)
AMCG00020692 NA coding downstream 577256 30128219 ~ 30145527 (-)
AMCG00020686 NA coding downstream 1218371 29487288 ~ 29504412 (-)
AMCG00020680 NA coding downstream 1254762 29464875 ~ 29468021 (-)
AMCG00020682 NA coding downstream 1265132 29418816 ~ 29457651 (-)
AMCG00020699 NA coding upstream 20150 30758126 ~ 30760083 (-)
AMCG00020706 NA coding upstream 401717 31139693 ~ 31143403 (-)
AMCG00020705 NA coding upstream 408111 31146087 ~ 31151972 (-)
AMCG00020711 NA coding upstream 688545 31426521 ~ 31432953 (-)
AMCG00020712 NA coding upstream 697652 31435628 ~ 31448649 (-)
G65073 NA non-coding downstream 20610 30700486 ~ 30702173 (-)
G65071 NA non-coding downstream 29416 30693148 ~ 30693367 (-)
G65068 cdyl2,LOC106562298 non-coding downstream 49821 30672745 ~ 30672962 (-)
G65061 NA non-coding downstream 105649 30616880 ~ 30617134 (-)
G65050 NA non-coding downstream 186887 30535292 ~ 30535896 (-)
G65109 NA non-coding upstream 92205 30830181 ~ 30830542 (-)
G65166 NA non-coding upstream 414443 31152419 ~ 31156265 (-)
G65178 NA non-coding upstream 474962 31212938 ~ 31217885 (-)
G65179 NA non-coding upstream 481567 31219543 ~ 31219744 (-)
G65221 gas8,LOC108276428 non-coding upstream 742780 31480756 ~ 31481969 (-)
AMCG00020694 wwox other downstream 191647 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 1189666 29520191 ~ 29533117 (-)
G65000 NA other downstream 1317147 29381315 ~ 29405636 (-)
G64882 NA other downstream 1925827 28788580 ~ 28796956 (-)
AMCG00020661 ss18l2 other downstream 2394471 28325037 ~ 28328312 (-)
AMCG00020702 NA other upstream 62606 30800582 ~ 30808846 (-)
AMCG00020713 NA other upstream 627687 31365663 ~ 31412823 (-)
AMCG00020746 NA other upstream 1383909 32121885 ~ 32122933 (-)
G65549 NA other upstream 1620262 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 1816884 32554860 ~ 32559096 (-)

Expression


Co-expression Network