AMCG00020762 (LOC107393839,LOC104958878)


Basic Information

Item Value
gene id AMCG00020762
gene name LOC107393839,LOC104958878
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32444254 ~ 32449876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020762
ATCCGCAGCCGCCGTGCGGGCAGGGGGCGGTACCTGGCCTATGTCTGGCGGAGGAGCCGTCAGCTGGCAGTCGCTGTGGAGGACGAGCTGGACGCAGAGATGGTCTGCGAGAGggtTCAGCCTATTCAGTACACCACTGACTGCAAGGCCCAGAGTTTCGATGGCGTGGTGTTGGTGTCCTGGACGGTGCAGCTGCCGCAGGGTCTGCGCTGTTTGCAGGAACCTCTACAGGAATACCAGAAGgtagactctgctctgtgtgaggAGGTGAATTTGCTGAAGGTGCCAGGACTGCCCGGGGACAGGCTGGTCTTTGCATGTACAGGTCCAGTGAACCGCGACTACGATGATGTTCGGAGGTTCAGCGACGCAGCCATAAATGGAATCAAGAGAGCCCTGAAAGCTGGTATGAAGCGCCCTCTGTTGGTGTGCCCGCCTCACAGCGACTACAAGGAGAGCCCCCTGGTGGCTGTTATGGGTGCTCTGCACGCCCTGTACGTGccACTGGAGGTGCGAGAGGCTGCAGTGACGCAGAGAGCCCACAAGGCAGAGATGCTGGGTGTGTGGGTATCCACGGAGGAGCAGGGCAAGAGGATCATACAGCTGGCTACTGCGCTGGAGAGCGGACGGCTGGTGTGTCGTGACATCGGGGGCTCGGACCCGGAGCGTATGGCAGCCCCCCGTGTGGCGGAGTACGTACAGGAAGTCTTCAAAGACAGCCCTGTGGAGgtcagtGTGGTCAGCGATGTGGAGAAGCTGGAGAAAGAGTACCCCTGCCTGGCCGCGGTGAATCGCTGTGCCCACGggGTCGAGAGACACCAGGCCCGAGTGATCCAGCTGCAGTACTGTGGGGAGGGGCCGGTGCACAGCACTCTGCTGCTGGTGGGGAAGGGCATCACATACGACACCGGGGGGGCTGACATCAAGGCAGGAGGGATGATGGCAGGGATGCACCGGGACAAGTGTGGCTCCGCAGCGGTGGCTGGATTCTTCCAGGTGCTGGCGGAACTCAAGCCCAAGAATCTGAAGGTTCTGGGTGCCATGGCGATGGTTCGGAACAGCGTGGGGGCCGactgcTACGTGTCTGACGAGCTGCTGTGCTCCCGGGCGGGACTGCGGGTGCGAGTGGGGAACACGGACGCAGAGGGCCGCATGGTGATGGCAGACCTGCTCTGTGAGATGAAGGAGAAGgcAGCGTCTGAGGTTGCCCCTGAGCTGTTCACTATCGCCACCCTGACTGGACACGCCATCCGAGCCATGGGGCCAAACTACTCTattATCATGGACAACGGTCCGGCTCACCGCGCAGGCAACGCTCGGCAGTGGCAGCAGGCGGGCGACGTGCTGGGTGATGTGTTTGAGGTGTCCACGGTGCGCCGGGAGGACTACGAGTTCCACCGCGGGCGCTCCGAGTACGAGGAGCTGCTCCAGAGCAACAACCTGCCCTCCAGCGCCACGCCCCGCGGGCACCAGACCCCCGCCGCCTTCCTCACCATGGCCTCCGGGCTGCACAAGcatgGCGTGGACTCGGATGCCCCTCTGTGTTACTCCCACATCGACATCGCCGGCTCCTCCGGTCCCTTCCCCGGCGTCCCCACCGGAGCACCCATCCTCGCCATGGCAACGCGCTACATCTTCCCCCACCTCTGAGCGCGGAGACCTCCTTGCTCACTCTTCCTCACTTTGTCCATCTGTCCCTGCCTCGCTTTCATTCTATCCagcaagaaaattaaaaaagggattTCATTTTCGTTTccttctctctgcctgtctATTTCTGTGGTGTGTGATGCTGGGGTGCAGTTAGCATGTATTCCAGCACAATCGAGTGGAATAGGATGTGGTGCGATCAGTGATGTGCTGTAAGAGGACAGGCTGTGTGAGAATAAAGAGTTTTCCGACCTga

Function

NR:

description
PREDICTED: putative aminopeptidase W07G4.4

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020762 True 1906 mRNA 0.61 17 32444254 32449876

Neighbor

gene id symbol gene type direction distance location
AMCG00020760 pcna,LOC106580445,LOC106585071 coding downstream 583 32439694 ~ 32443671 (-)
AMCG00020763 kcnip3a,LOC108440810 coding downstream 37729 32398435 ~ 32406525 (-)
AMCG00020761 slc23a2,LOC107394182,LOC108440813,LOC106585070 coding downstream 47734 32385090 ~ 32396520 (-)
AMCG00020764 NA coding downstream 65330 32374088 ~ 32378924 (-)
AMCG00020758 NA coding downstream 74536 32368118 ~ 32369718 (-)
AMCG00020765 NA coding upstream 5704 32455580 ~ 32462337 (-)
AMCG00020769 adra2b,LOC108440671 coding upstream 43493 32493369 ~ 32495441 (-)
AMCG00020768 NA coding upstream 114369 32564245 ~ 32580573 (-)
AMCG00020775 NA coding upstream 135017 32584893 ~ 32591227 (-)
AMCG00020777 NA coding upstream 144394 32594270 ~ 32598433 (-)
G65468 NA non-coding downstream 228497 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 256543 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 382957 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 640462 31785515 ~ 31803792 (-)
G65315 NA non-coding downstream 685754 31757451 ~ 31758500 (-)
G65571 NA non-coding upstream 65527 32515403 ~ 32515617 (-)
G65753 NA non-coding upstream 824300 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1355825 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1381859 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1511301 33961177 ~ 33962191 (-)
G65549 NA other downstream 79112 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 321321 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 1031431 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 1635408 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 1706278 30722783 ~ 30737976 (-)
AMCG00020767 NA other upstream 104984 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 157986 32607862 ~ 32610708 (-)
G65641 NA other upstream 205258 32655134 ~ 32657019 (-)
G65679 NA other upstream 436488 32886364 ~ 32891493 (-)
G65756 NA other upstream 918749 33368625 ~ 33369105 (-)

Expression


Co-expression Network