AMCG00020790


Basic Information

Item Value
gene id AMCG00020790
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33146461 ~ 33156561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020790
CTCACGGCGGTCGTCCactctgtgtttcaggatggCAGCAGCGCAGGACAGAAGAAACCCGGATCTGTGTTTCAGGACAGTGCTGGGGGTGCTTTTCGCCGTCTACCTGAGCACAGGTGTCACTGTGGCAATGCAGATCACTTCCTATGGTCCTCAGACCATTCAGAAGGCGCAGGGGGAGCAGGTGACGCTGGGATGCACGTACACCCCCGCCGCCTCAGATGTGGGACCGATGGATATTGAATGGTTCAGCCTCAGCCCGGACATGACCCAGAAAGACACTCTGATCTTATCCTACATTGAGGGCCAGAACTCCAATTACACCATCCCAAGTCTGGCGAACAGGCTGGTCTTCACGGCCAGGGACCCCAGCCAAGGCGATGCATCCATCACCCTGTCAAACTTGGGGGCCTCGGACACCGGCACCTACCAGTGCAAAGTGAAGAAGGGTCTCGGCAATGACATGCGCAAAATCACGCTGGTGGTGATGGCACCCCCTTCCGTGCCCAAGTGCTGGGTTGAGGgtaaggaggaggagggggcgcCCGTCTCAATGCGCTGCAAGTCTTACTATGGCTCCACCCCTCTCAGCTACAGCTGGTTCAGGGAGAGCGGGGGGAGTATTCCCCCTGTTGCTGTACAAAATCCTCAGACCGGCGAGATGCTGATCAAGAATCACTCGCAGAGTTACGTGGGCAACTATCGCTGTGAGGCCTCGAATGCGGTGGGCAAGCAGCAGTGCATCTACACACTGCGGGCCTACACACctgTCAACAGAGCTGGAATGATTGCAGGTGCTGTGATTGGTGCTCTGCTCCTGGAGGACGCCCCACCCCCTGCGAGCCGCCCCGTCACGCCCAACTCCAGCTTCCGCTCCGTCCTCGGGTACCGCTCGCACGCCGGCCTCAACTACAACTTCGTGGGCGGCCGGCATTCGCGGCCCGGGTCCTCCGTCCGCAGCAGCATCTACACAGAGAAGAAGGGCCAAATGGCACGGCAACCGTCCTCTTACAGCCAGCCCAGCGTGGTCAGCGGGGTCCCCTCCGCAAAGTACTCCAGCAAGTACGGGTACCCGGTATGAGCGCAGCCGACTGCCAACTCTGGTGGGTGGGGGACGTGGGGGGGAGAGGTGACACAGGAATTACAATGCTGTACGTGTAAAGCTAACCCCTTACCGGTGATGGAGAACTACAGGCTACTAATTGGAGTGGGATgacaggactggactggactggatggTGCAATATTCCTTTTCTGCTGTTTGGGAAgacataaaaatagaaagttCAAATGCCATCAGATTGCTGTTTACAGAAGAGAGTGGAGAGAACATGTTTGTGTCTGAGGAGATCTAATTtccatatttgtatatatgtatatatcaatatatttgtgCACTTATCTACTGTTTTCTATACTATATATTCGCATTTGTGTTCACATACACTATATTACCAAAAGTATTGGGACCACCAAATCAAATTGGCAATCCATTTAAGAGTTTGTAGGTGGGAAAGTGTGTATATCCTCCACTCAGGGCCGTGAGAAAAAGGCACCACCATTATATTCACCCAGTCTGACCTCAACATACAATCCCACCAATGCTGGCAGAAACTGTGTTATATAAACATGCCAAAGCATAGTGGTTATCAGGGAGCCCTTCGTATAAACCTCAGGCTCTCCACAGCACCGCACAGAGGGGCTGCTTGTGCGAATACTGCTGGTAATATAGTGTATCTGAAAGAGATATTTACAAGGACTGGAGTCCCTTCTATAAGCATTCTATTAGAAACAACATGTCAAACTGAAGCAACAGACAGCACATGTTTGTACACTTCACAGTGAATTGATTGGAACCCTAATTACCAAGAAGGAGGGTTAGTTCAACTTAATTCAATCATGTTGACTGTGTTGTATATCGTATTCTCTCCGTGTCAAGCAATCTGATGTCTTTGTGTTAAAAGGCATTCATAATGTTTCTCATCACGTCAAAGTGAGCTTTCATACGCTGGTGTGTCTGCTGCAGTTTTTTCATTTCCAGTTCACTGAGCACTAGGCATTATTAAATATCTGCTGCCCCctacagaaatgaaaaagtactgtacatttaacaCACTCTGTTTTGTATTGGCCGGGGATTCAAATTCATCTGCTGCTGAAAAACCTAATAATGACCTCCAGGTGTCAGActagaataaacaaaaaatctagaaaaatgtaatgaataaaataatgtatactgtCTCAGGAGAAATACTTGTGTAAATGTAATTCAACCTTGAAAACAAATTGATGAAACTCTTAATATGTATGGATCAAGTATcaagagaaatatataaaaatggtaCCTTCTCATTCATTTGTGTACGGGTAGGAAaagtgctgtttgttttaataagagTTTGGTTCTATTGTTCAAGCTGCAAACCTCAGGTCACACAGTATAATCTAGAGTCAGCAGCAGACATTgcctgtgcattttattttagtccCTGGCAACCTGATTATTGtgtacttttatatatttttctattataatGTCTAAAAGGAAATCCTTGTAGTTTAGATGTtaacactgtaacactgtaagTACCACGATGATGTAAACTGGGATGacatatatgcatttgtataaCTGTATTGtgtacataatttattatttttgttcgcTGTTAAATGCtctatactttttaaaatatgttttatctATATTTGAATAGTAAAAAATTCAATTATTGTCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020790 True 2744 mRNA 0.46 7 33146461 33156561

Neighbor

gene id symbol gene type direction distance location
AMCG00020788 NA coding downstream 165936 32962541 ~ 32980525 (-)
AMCG00020787 NA coding downstream 319832 32825655 ~ 32826629 (-)
AMCG00020785 NA coding downstream 398189 32746746 ~ 32748272 (-)
AMCG00020784 NA coding downstream 443012 32699199 ~ 32703449 (-)
AMCG00020773 NA coding downstream 472083 32668911 ~ 32674378 (-)
AMCG00020792 NA coding upstream 41071 33197632 ~ 33207776 (-)
AMCG00020798 NA coding upstream 759020 33915581 ~ 33923435 (-)
AMCG00020804 es1,LOC108430344,LOC107553036,LOC107714576 coding upstream 836248 33992809 ~ 33995725 (-)
AMCG00020805 NA coding upstream 866458 34023019 ~ 34027562 (-)
AMCG00020803 NA coding upstream 900393 34056954 ~ 34075604 (-)
G65571 NA non-coding downstream 630844 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 930704 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 958750 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 1085164 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 1342669 31785515 ~ 31803792 (-)
G65753 NA non-coding upstream 117615 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 649140 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 675174 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 804616 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 825229 33981790 ~ 33982026 (-)
G65679 NA other downstream 254968 32886364 ~ 32891493 (-)
G65641 NA other downstream 489442 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 535753 32607862 ~ 32610708 (-)
AMCG00020767 NA other downstream 587365 32554860 ~ 32559096 (-)
G65549 NA other downstream 781319 32358238 ~ 32365142 (-)
G65756 NA other upstream 212064 33368625 ~ 33369105 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1065754 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 1652043 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 1682200 34838761 ~ 34841323 (-)
G66054 NA other upstream 1706058 34862619 ~ 34865305 (-)

Expression


Co-expression Network