AMCG00020813


Basic Information

Item Value
gene id AMCG00020813
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34216896 ~ 34220680 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020813
ATGACGAAGAGCAGGAAGGTCGCGGCTCGGCGGTCTGACCCGGAAGTCAATCGCGACAACAACATCCGGGGCGGCGCTGGCCAGAAACATGATTTCCTGGCTCTGTCGGCTCTGTGGCGCGGCCGCAGCTTCGACTGGCACAGAGCCGGCATGACCGACGCGCAGCCACCCCAGCGCCGCTGCTCCTCCTCCGCGCCCTCGGACACTGACCGGCCGGGGCCCGGGCATCGGATCAAACGGGTTTCCATTGAAGGCAATATCGCGGCAGGGAAGTCCACCTTTGCCCGACTGCTCCAGCAGGCGGAGCGGCAGTGGGAGGTCATCACAGAGCCCGTCTCCAAGTGGCAGAACATCCAGACAGAGGGTGAGGCGTCCTCCCAGCAGACGAGCAGTAACCTGCTGCAGCTGATGTACCAGGAGCCCCAGCGCTGGTCCTACACGTTCCAGACCTTCTCCTGTATGGGCCGCATTAAGGCCCAGCTGTCCCCCGCCCCCGAGCGCCTGCTGGGGCTGGAGCGGCCCGTTCTGATTTTTGAGAGGTCCGTCTACAGCGACAGGTATGTGTTTGCCATGAACATGTTTGAGCTGGGCTGCATCGACGACACGGAGTGGACCATCTACCAGGACTGGCACAGCTTTCTGGTGAAACAGTTTGGCCCCAGGATCCAACTGGACGGCATCATCTACCTCAGAGCCCAACCAGAGAAGTGTCTGGAGAGGCTGGGGCGCCGGGCGCGGGACGAGGAGAAGGGCGTCCAGCTGGGGTACCTGAAGAGACTACACACCCAGCACGAGAACTGGCTCCTGCACAGGACCACACAGTGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko05166 Human T-cell leukemia virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020813 True 825 mRNA 0.63 7 34216896 34220680

Neighbor

gene id symbol gene type direction distance location
AMCG00020811 NA coding downstream 5810 34208909 ~ 34211086 (-)
AMCG00020807 NA coding downstream 103207 34112643 ~ 34113689 (-)
AMCG00020803 NA coding downstream 141292 34056954 ~ 34075604 (-)
AMCG00020805 NA coding downstream 189334 34023019 ~ 34027562 (-)
AMCG00020804 es1,LOC108430344,LOC107553036,LOC107714576 coding downstream 221171 33992809 ~ 33995725 (-)
AMCG00020812 NA coding upstream 19209 34239889 ~ 34272166 (-)
AMCG00020815 NA coding upstream 69307 34289987 ~ 34314712 (-)
AMCG00020821 tmem150a,LOC106585116,LOC106580507 coding upstream 212745 34433425 ~ 34441728 (-)
AMCG00020822 NA coding upstream 222606 34443286 ~ 34456490 (-)
AMCG00020830 NA coding upstream 298520 34519200 ~ 34522321 (-)
G65867 NA non-coding downstream 1337 34215057 ~ 34215559 (-)
G65858 NA non-coding downstream 99953 34116606 ~ 34116943 (-)
G65845 NA non-coding downstream 163788 34052460 ~ 34053108 (-)
G65844 NA non-coding downstream 165827 34049996 ~ 34051069 (-)
G65815 NA non-coding downstream 234870 33981790 ~ 33982026 (-)
G65915 NA non-coding upstream 195977 34416657 ~ 34420190 (-)
G65957 NA non-coding upstream 293688 34514368 ~ 34515898 (-)
G66001 NA non-coding upstream 526261 34746941 ~ 34747361 (-)
G66003 NA non-coding upstream 528447 34749127 ~ 34749329 (-)
G66004 NA non-coding upstream 528764 34749444 ~ 34750150 (-)
G65756 NA other downstream 847791 33368625 ~ 33369105 (-)
G65679 NA other downstream 1325403 32886364 ~ 32891493 (-)
G65641 NA other downstream 1559877 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1606188 32607862 ~ 32610708 (-)
AMCG00020767 NA other downstream 1657800 32554860 ~ 32559096 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1635 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 587924 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 618081 34838761 ~ 34841323 (-)
G66054 NA other upstream 641939 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 928888 35149568 ~ 35170179 (-)

Expression


Co-expression Network