AMCG00020819 (LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217)


Basic Information

Item Value
gene id AMCG00020819
gene name LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34462466 ~ 34475645 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020819
ATTCGGTTGGCTGGGGAGTGGAGTCTGTGGTTCACGATCAGCGCACTAGCAGATATCGCGAGAGGTGCTGGAGTTGCGGAGGAAAGACAGCGGGTGAAGGGTTACGCAGCGATCTGGTCAAGGGACTGCCAACAGTGTTAATATTGCACTATATTTTAAACTCGCCGCTGCTCTGGGGGAATATCTTACAGACACTTTCGCGGTGAACTGCGATTCCTAACGCCGCTGCCATGACAGAGCTGAGGCACCGGGGCCCGCAGGAGAATGAGATGCAACAACAGCCCGATGACAAGggCTCAGAGTCAGAGGTGAGGACAGATGGAGAGGCGGCCTCAGACAGTGAGACGAAGCAGGACTCGGGGGTTCCTGAAATCCCCCCTACTGCCGATGACACCCCCGAGGTCCTCAACAAGGCCCTGTCAGGATTGTCCTCACGATGGAGGAACTGGTGGGTTCGTGGCATCCTCACTCTCGCCATgatctccttcttcttcctcatCATCTACCTGGGCCCAATAGTCTTAATGATGATCGTGCTGTGTGTGCAGATCAAGTGTTTCCATGAGATCATCATGATTGGCTACAGCGTCTACCACTCCTACCACCTCCCCTGGTACTTCCTGCTGTGCGTGAATTACTTCTTCTACGGCGAGACGGTGACGGACTACTTCTTCACCCTGCTGAGAGGTGTAGggtTCTGCATGTTCGTGTTGAGCTTGGTCAAGAAGCACTACCGCCTGCAGTTCTACATGTTTGGATGGACTCATGTGACACTATTGATCGTTGTGACACAGTCTCACCTGATCATCCACAATCTCTTTGAAGGCATGATCTGGTTCATCGTGCCCATCTCCTGTGTGATCTGCAATGACATCATGGCCTACATGTTTGGCTTCTTCTTTGGCCGCACTCCACTCATTAAGCTGTCTCCAAAGAAGACCTGGGAAGGCTTCATAGGAGGATTTTTCGCCACGGTGGTGTTCGGACTTCTGCTCTCCTATGTGATGGCGGGGTACCGCTACTTTGTGTGTCCGGTGGAGTTCAACAACGACTCCAACAGGTTCACTGTGGACTGTGAGCCGTCCGACCTCTTCCAGCTGCACAACTATGGCCTGCCAGCTGTCCTGCAGTCTCTCACTGGCTGGaaaACCGTGCGGATGTACCCCTTCCAGATCCACAGCATTGCTCtgtccgccttcgcctccctcATGGGGCCCTTTGGGGGTTTCTTCGCGAGCGGCTTTAAGAGAGCCTTTAAGATCAAGGACTTCGCCAACACCATCCCAGGGCACGGCGGAATCATGGACCGCTTCGACTGCCAGTACCTCATGGCCACCTTCGTCAACGTCTACATCGCCAGCTTCATCAGGGTGATGCAGCAGCTCCTGGCTCTGCGACTGGATCAGCAGCTGCACATCTTCAACTCCCTCAAAGCCCACCTGGTGGACAAGGGGCTGCTCTCAGCCATTGAGGAGGTGGCTTAG

Function

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 2-like

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020819 True 1484 mRNA 0.54 14 34462466 34475645

Neighbor

gene id symbol gene type direction distance location
AMCG00020824 NA coding upstream 5565 34452211 ~ 34456901 (+)
AMCG00020825 NA coding upstream 10739 34450528 ~ 34451727 (+)
AMCG00020823 NA coding upstream 12269 34445279 ~ 34450197 (+)
AMCG00020818 NA coding upstream 35617 34420834 ~ 34426849 (+)
AMCG00020816 NA coding upstream 43799 34413614 ~ 34418667 (+)
AMCG00020827 NA coding downstream 5734 34481379 ~ 34493390 (+)
AMCG00020826 NA coding downstream 22641 34498286 ~ 34502202 (+)
AMCG00020835 hk2,LOC106585103 coding downstream 375017 34850662 ~ 34865362 (+)
AMCG00020840 NA coding downstream 403045 34878690 ~ 34879805 (+)
AMCG00020842 NA coding downstream 405846 34881491 ~ 34892993 (+)
G65877 NA non-coding upstream 195366 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 200537 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 399871 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 411429 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1580348 32879099 ~ 32882118 (+)
G65954 NA non-coding downstream 37012 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 38401 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 51222 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 201266 34676911 ~ 34732379 (+)
G65994 NA non-coding downstream 271248 34746893 ~ 34748114 (+)
AMCG00020820 NA other upstream 50846 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 403001 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 501884 33954806 ~ 33960582 (+)
G65705 NA other upstream 1354040 33107873 ~ 33108426 (+)
G65691 NA other upstream 1473021 32946731 ~ 32989445 (+)
G66008 NA other downstream 308567 34784212 ~ 34787474 (+)
G66060 NA other downstream 492199 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 671958 35147603 ~ 35149418 (+)
G66149 NA other downstream 688168 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1271511 35747156 ~ 35750446 (+)

Expression


Co-expression Network