AMCG00020821 (tmem150a,LOC106585116,LOC106580507)


Basic Information

Item Value
gene id AMCG00020821
gene name tmem150a,LOC106585116,LOC106580507
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34433425 ~ 34441728 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020821
ATGGCGGGTCTGGGAAGCTGGGGGGGTGTCCCATGGTGCCAGCCAAGTCAGGGTCAGCAGCAGCGGTGTCGTCAACCTCTCATGTCCCCTCAAGTCTCCACGCCCGCTAGTCTCCTCGACGAGCCCATCGTCCTGCCCACCCCGCCCCAGTGTGGCCTCCCGTCTCCTCGCCGGCTGCTCTAGTCTACCTCCTCCTCATGCTTTGGACACACGCCCGACCCGGCCTCCCCAATGACTGCCTGGATCATTCTCCCCGTCAGCCTCTCTGCCTTCTCCATCACGGGAATATGGATTGTCTACGCCATGGCAGTGATGAACCACCATGTGTGTCCCGTGGAGAACTGGTCCTACAACGTGTCGTGCACAGAGGAGACCTCCAAACACGGCTTCCCAAAGAGCTGCTGCACCCTGCAGGACATCCCCCTCATCAGTAAATGCGGCTCGTTCCCACCAGAAAGCTGCCTCTTCAGTCTCATTGGGAATTTGGGAGCGTTTATGGtgGTGATGGTTTGCATGCTGCGCTATGCCCAGGTGATCGAGCACAGCCACCGCTCCTGGGTGAACACCAGCGGTCTGATCACTGGCTGCACCAATGCCCTGGGCCTAATCATGGTCGGCAACTTCCAGGTGGACCATGCCAAGTCTCTGCACTACATCGGCGCGGGGGTGGCCTTCCCGGCCGGGCTGCTGTTCGTGTGTCTGCAGTGCGTGCTGACGTATCGCATCGCTGTCACCGCGCTTGACTACTGGATGGCGCACGTACGAGTCGGGCTCACCGCCGTGGCCTTAGTCTCGCTCATCCTGAGTGGGATCTTCTTCATCCATGAGAGCTTCCACCTCCAGCACGCGGCAGCCATCTGCGAGTGGATCTTCACCGTGGACATCCTGGTCTTCTATGGCACCTTCACCTACGAGTTTGGCGCCGTGACCAACGACACCATGATCGTGGCCCTG

Function

symbol description
tmem150a Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Is integral component of plasma membrane.

NR:

description
PREDICTED: transmembrane protein 150A-like

GO: NA

KEGG:

id description
K21846 TMEM150; transmembrane protein 150

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020821 True 954 mRNA 0.60 8 34433425 34441728

Neighbor

gene id symbol gene type direction distance location
AMCG00020815 NA coding downstream 118713 34289987 ~ 34314712 (-)
AMCG00020812 NA coding downstream 161259 34239889 ~ 34272166 (-)
AMCG00020813 NA coding downstream 212745 34216896 ~ 34220680 (-)
AMCG00020811 NA coding downstream 222339 34208909 ~ 34211086 (-)
AMCG00020807 NA coding downstream 319736 34112643 ~ 34113689 (-)
AMCG00020822 NA coding upstream 1558 34443286 ~ 34456490 (-)
AMCG00020830 NA coding upstream 77472 34519200 ~ 34522321 (-)
AMCG00020829 LOC106531303,LOC108443303,LOC103397456,LOC105014365 coding upstream 88055 34529783 ~ 34553326 (-)
AMCG00020828 NA coding upstream 127884 34569612 ~ 34573502 (-)
AMCG00020832 NA coding upstream 277976 34719704 ~ 34728364 (-)
G65915 NA non-coding downstream 13235 34416657 ~ 34420190 (-)
G65872 NA non-coding downstream 213415 34218759 ~ 34220010 (-)
G65867 NA non-coding downstream 217866 34215057 ~ 34215559 (-)
G65858 NA non-coding downstream 316482 34116606 ~ 34116943 (-)
G65845 NA non-coding downstream 380317 34052460 ~ 34053108 (-)
G65957 NA non-coding upstream 72640 34514368 ~ 34515898 (-)
G66001 NA non-coding upstream 305213 34746941 ~ 34747361 (-)
G66003 NA non-coding upstream 307399 34749127 ~ 34749329 (-)
G66004 NA non-coding upstream 307716 34749444 ~ 34750150 (-)
G66087 NA non-coding upstream 457056 34898784 ~ 34942966 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 193728 34222315 ~ 34239697 (-)
G65756 NA other downstream 1064320 33368625 ~ 33369105 (-)
G65679 NA other downstream 1541932 32886364 ~ 32891493 (-)
G65641 NA other downstream 1776406 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1822717 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 366876 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 397033 34838761 ~ 34841323 (-)
G66054 NA other upstream 420891 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 707840 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 902978 35344706 ~ 35349499 (-)

Expression


Co-expression Network