AMCG00020829 (LOC106531303,LOC108443303,LOC103397456,LOC105014365)


Basic Information

Item Value
gene id AMCG00020829
gene name LOC106531303,LOC108443303,LOC103397456,LOC105014365
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34529783 ~ 34553326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020829
CTTTCCCCCGGAAGTGGCCGTGCAGGTGATTATTTTGTCCACATTGGAGCGACCGCACAGAAACAGAGCAgGATGACACAGCTGGGGGCCATCGCCTCCATCCTCCTGGCGTTCACCGCCGCCGCCCTCTTCTCTGCGGTTCATAAGATCGAGGAGGGCCACATCGGGGTGTACTACAGGGGTGGTGCTCTGCTGACCTCCACCAGCGGCCCTGGCTTCCACCTCATGCTGCCCTTCATCACCTCCTTCAAATCTGTCcagACGACGCTCCAGACCGATGAGGTTAAGAACGTCCCCTGTGGCACAAGCGGGGGGGTGATGATCTACTTCGACAGGATCGAGGTCGTAAACTTCCTCATCCCCTCAGCAGTGTACGATATCGTGAGGAACTTCACCGCCGACTACGACAAGGCACTGATCTTCAACAAGATCCATCACGAGCTGAACCAGTTCTGCAGCGTGCACACTCTGCAGGAGGTCTACATCGGGCTGTTCGATCAGATCGACGAGAACCTGAAACTGGCTCTGCAGAAGGACCTCACTGCCATGGCCCCTGGCATCGTCATACAGGCCGTCCGCGTCACCAAACCCAACATCCCAGAATCCATACGGCGGAACTACGAGCTGATGGAGAGTGAGAAGACCAAGCTGCTGATTGCAGCGCAGACACAGAAAGTGGTGGAGAAGGAGgcggagacagagaggaagagagctGTGATTGAGGCAGAGAAGCAGGCCCAGGTGGCAGAGATCAAGTATGGACAGAAAGTAATGGAGAAGGAGACAGAGAAGAAGATTTCAGAGATTGaagaCTCTGCATACCTGGCCCGGGAGCGTGCCCATGCGGACGCAGAGTTCTACACGGCCCAGCGGAACGCCGAGGCCAACAAGCTGAAGCTGACCCCGGAGTACCTGCAGATGATGAAGTTCAAAGCCATCGCGGCTAACAGCAAGATCTACTTCGGCAGCGAGATCCCGCACATGTTCGTGGACTCGGGGGCGGCCGGCACCCGGGCCCCTGCTGTGGCTGGAGTCACAGAGGGCGGGGCCCAGGGCCACAGCTAGACCATGGGAGTGGAGGAGATAGAGTTGGGAGTCCGGTGATGGGAGTGGGGACTTTAACTGGTCAATCATTGAAGCTGGTTTCTCATCTCCTCTCCTGAGAGATGTAACCAaacaccattaaaaacaaaaacaaaaaaaacaaatttaccCTAACCAGTccacacaaatattttagaattctcccccccacacacatacacacacacttgcagagatacatggacacacagacacgcttacacacagacacaattctgtccttttcctttttaaactattttaagcACTGTGTGAACCAGTGATGGGTTCAAAACACATGGCACTCAAAGGACCAAATTGCCGACCTGGCGGGGTGCCAGTGTGGACTGGGGCTGAGAGCCGCAGCGCTGGGGTTTTATTGGGGAATAAGTTTGTATCTGTAAAGGGTTTGGGGGGTTAAATGAGCTGAGCAAGGGGAGACCAAACCTACCTGTGCGTGTCAGGAACAGTGTCCATTCTGCATTATGGCTGTTGGCTGTAACCTGCAGGCCCTGTGTGTGGCTTAGTTTTTATccgttttgttatttttaaggttATTTTTGTTGGTAACATTTTGTCTGCCTTTGgtcaaatcatttttgtttggtGCAGAACACACAATTGGGGAATGCCAATCTGTAATCTGGCACACCTGGCAAGCAGGTCACATTACCTCGGCTGATGTAAGGACTTTTTCTTATCTGTACATATGTACATAGGCAATGGTCTGGCCTGATTTCTATATTTGGGTTTGTTGgcttatgtatgttttattctgtaGTTATTATAATTGGCAGTGCAGACTAAGCTGTTTCCTGTATCGTGTCATGGTGGATCCCATGGGTGAGCATCAGTGTGGGAAGGCAGTTAGAATGGAGTGCCATCAGGCTTCCTATCCTCCTCTAAAACCCTGAATCAGAGTTCCTGTGAGGACCCTGGTTCTTGTACAGCGTCGAACACATTCCTGGTCAGTGTGCGTCTACATCTTCTGCATTCCTTACTGTTGGAGCTGTTGTAATTGGTTTGGCAGTGTTCAGTTACTCTGAATGAGCATACCCCCCATTTATAGTAGACCATTCCACTTTATTGGGGATGGGGGTTAAAGTACAGTCCGTCTTTTAGAATTTCTTCTGATGGAGTCACACAGAGCAAGAAGAGACCCAGTCATCCCCATTTGACTGCccatttgttgttattctgtattGCTTTCACATAGTGGTTCTGATCACAGGTATTGGCACTTTGCTGAGACCAGTGGAAGTTCACACAGTGATGCCCCCCACAGTAAGATAATGTAGTGCAGCCTGTTTTCTGTTCAGCCTCTCCCAAATATGCACCAGATGTCGGGTGGTGGTTGGGCCTGGTGGGGGTCACCCCAGGAAATCTGTCTCCCTACCAATCCATAACTTCAGATCTGTGACATAAAACTACACCTGACTGACTGAACTTAAGTGGGATAGGGCTAGGTGTTTTTGCTGTATTCAGTGTgggtttatgtatatgtgtgacATACAGAGAGGTATTTTTCATTAGCAATTGAAATGATGGCCCTGTGGTCACTCCCTTGGCCTGCTGGGAAATGTTTGTGGTTCCATTGTCGTCTGTGCCGGTGGTCTACTGGCGTCACTGCAGGGACTTTCCCTCTGTCTCCTTTCTCctcctttctccttctcttccctccctctgcaCAATGCAAAAATCTATTTGGCAGGGCCGCAGGAAATGAGGAAGTGGTCTTTCTGATAGTTCAGGATTTTCCAGCAGGCTCTGTTCTCTGCTCAGTGTGTTGTCTGTGACCTTTGTGTGTGATATCTTTTTATATCTGATGTGTTTAGATTGCATTGAGTGCCTCCCACACACACTTCCACAGACGTGTCCACACCACAACACTTGCACAGGGACATAGAGCGGCTTCTTTTTGGGAAGGAAGTCCCGCTGTACTACGTTATGCTTTGTAATCATGATGTCATCGTTGGACTTTGGGGGATTAATCCCAAAGATGGGGAAAAATAGGGAAAATTCTAGGTGTCTTGCAcaccttttatttgtataatttgtttagAACTGTTATTTTGATGGGACTTGTCCCCTTTTCCACTGCAGCTATAACCCTGGAGTCTCCACATGGCTCTGGGCTCTTCTGAGCTCTTTGGGCTCCTAAATTTGGATGAAGTGGTTTCCTTTTTGGTTATCTCATCCAATTGGCTAAGATTAAGTGTAGaatctgtttttaatagttCAATATCCGAGTGTCTTTTAGCAGGGCTCCCATAGGGCTTCTTCAACTGCCAGGGAACCCAACTGAGTTTCTGATCAACACAAAAGTCTCgggtctctgtctctctctcctcagctgTGATTATACCAAGCACAGATATGGGGTTTACAGCACATGTGTGCGTGTTAACATCTGCAGGGAAGTGCTTTCATTCTTGCTCTCCACTGTCTGAACATGCTTCCAGCAAACAGTTTGGGAACCTGCTCTGTACTGAGATTGGCAGCAGACCCAAAACTATAAGACctacactgttttgttttacacaacaTCAGATTTTGGTTATACTTTTTTGGGTGATTTAAATACTAAAATTCCCCTACCTTACCTAGTACCCTGCTAGGTGTTCAATCCACCCTGttcaagaatatatatatatatatatatatatatatatatattaccccTAGATATGGGATGAGGCCCTAATATATGTATTGCTAAATAGGAAggataattaaatatacagtaacaaCCTCAAAATGAACAAATTTGATAGGCAAAAATTCCTCATCAGCATCACCTGGAGATCTCCAGCTGTCCTGTGTTCCGGCGGGTCATGGCCAATTCCAGATTTTCCGTTCTGGTTCCATTTCCAATTCCTTTCtcaattcattttcagttccATTTCAGACGATTGTGTCCATGGCACAAttaattggaatttggaattcGGAATGGGCCTGAGAGGGAATTGGAATTGACCTTAACCCTGCTGTAGAAAGTGGTGTTCTGGAGTCGTGCAGTATCGTCACAACCCTAAGGGTGTTAAAGTGCTGCTGAATAAAATTGCTACTGAAGAAAAACCAGGCCAAGCCTCTTAGTTCAGATTTTCATGGGTATTTTCTTTCTACTGTTATAAAGGCACAGGAAGCTTCTGTCTGATGTACTAGCCTAGGCATGCCAAGGCTGTGCAAACACTGGTTTCAGTTTTgcttatatgtttttgtttttttgtggtcaAGTTCTTATTCAACCCCCATAATATTTGACATATTTGGGGTATGTATTGCACTGAATCACAATGTATGTATGAAGCTTGATTTTTAGATTATATCTTGCCATTGGTGGGAAGAATGGCAGGATTTGTGGTTTTTTTATGCCATGTTTTATTAgagattttatttatctgtagTTTGCATCGCTCTGTGAGGTTGAAGAAGGACACTGTCCCTCCCGTCACTGAGACTTAGATTGTGAACTGTACACGTCTGTGTTTTGGACCGAAGTTGCAGGTCTAAAGATTTCTTCACAGTGACACTACACATAGGAAGCGGTTTTATTAAGAATGTGAAGCTCACTGTGATGTCTGTGGGTGCTGTGACCTATCTGATTCTGCTATTCAAACACTAATTtggttatgtgttttttttctttaaacaatacACCGTCTGAACTGGGGGAAGCGAATCTGAGTGACTTTGCTTCTACAGTAAGGCTTCTGAATCATAACCCTCAAGGAGTAAGGGGCTTTCAAATGCATCCCATTGTATGTGTTCATGCTTTGATGTCTATAGAAGTGATTAAAAGTGTTGAGCCCGGGCTTGTTCGTTGCAGCGGAGACCATTTAAAAGCTGTTCCGGGTCTTGAGGTTCCTGGAAATCGCAGAAGCGTCTTAGTTGTAACTTGTGCCAGCGATGGTGGAGTAGATAACTACCGTGGAATGGCAGTTTGTTGGGATGAACAAGTGTTCTCTGTATTCTAGAGCTGTACGTCAGTGTATATTCCTCCAAATTTATGATCGATTTGCTTTGAAGTGCTGATGTAATGCCACTAAATTCATAAGAACTATGCAGTTCATTCATAAGAACAGTTtattccattttagtttttctcttttaattggTGAAACTAGCTGCTGCCATTTTATGTAGagatcatttgttttttcctttggcaattttcattaaaagttCGCTTTGTGTAACAACCAGACAACATTCCTCTGCTCAGCAGCCCCTTGTGTTTAATGATTTCGGCAAGAAAACCCACCGCCTCACAGTCCTATGTCCTTTTCTGCTTTCCTATCATTTTGTTTACTCTTGATTCTACATTTTTCTCAATCCTGGTAATAAGAAATATCTGctaatttctgttttaaaaagggaaatattcAAATTGTGATCGTCTATTTCTTACACCCTGGAAAAACGTGTGCAGCCTCATTGCATCaaagtgctgtttttgtgtctgtataatttgtattttatgtcgTCCTGTCCTCAATTGTCTTTGTGAAATGTGATGGCGACCTTCGTCTGCAGTTTGACTGTTTCTGAGACCCTCGTTGTTGCTCAGGTTGACGGCACACTCTGCACTGACGTGGTCCGTTTGGCACTGGGGGTCTGTAGTTGGACTCTGCGGCTGTTAAGCTGTCAAAAGAAACTGCAGCGGCCCAGAATGCTATGCAATCTCTGTTCTCCACATTCCTGAAGACCGAAgtagttgtgtttgtttgattggtctgttttttaatgacgTCAAGGGAGCAGtgtctgtattgtattgaaCTGTACAATATAATTACACAGCAGGTTACAAACTAAATGGGAAAAtagaaatgcattgatttttgtttataataatgattataaataaaCTTTAGGTTTTAACTATT

Function

NR:

description
PREDICTED: erlin-2 isoform X1

GO: NA

KEGG:

id description
K23341 ERLIN; erlin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020829 True 5975 mRNA 0.45 12 34529783 34553326

Neighbor

gene id symbol gene type direction distance location
AMCG00020830 NA coding downstream 7462 34519200 ~ 34522321 (-)
AMCG00020822 NA coding downstream 73293 34443286 ~ 34456490 (-)
AMCG00020821 tmem150a,LOC106585116,LOC106580507 coding downstream 88055 34433425 ~ 34441728 (-)
AMCG00020815 NA coding downstream 215071 34289987 ~ 34314712 (-)
AMCG00020812 NA coding downstream 257617 34239889 ~ 34272166 (-)
AMCG00020828 NA coding upstream 16286 34569612 ~ 34573502 (-)
AMCG00020832 NA coding upstream 166378 34719704 ~ 34728364 (-)
AMCG00020834 LOC105015180,LOC106568058 coding upstream 175801 34729127 ~ 34741671 (-)
AMCG00020833 NA coding upstream 198053 34751379 ~ 34755314 (-)
AMCG00020831 LOC102225713 coding upstream 209867 34763193 ~ 34770642 (-)
G65957 NA non-coding downstream 13885 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 109593 34416657 ~ 34420190 (-)
G65872 NA non-coding downstream 309773 34218759 ~ 34220010 (-)
G65867 NA non-coding downstream 314224 34215057 ~ 34215559 (-)
G65858 NA non-coding downstream 412840 34116606 ~ 34116943 (-)
G66001 NA non-coding upstream 193615 34746941 ~ 34747361 (-)
G66003 NA non-coding upstream 195801 34749127 ~ 34749329 (-)
G66004 NA non-coding upstream 196118 34749444 ~ 34750150 (-)
G66087 NA non-coding upstream 345458 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 450252 35003578 ~ 35077562 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 290086 34222315 ~ 34239697 (-)
G65756 NA other downstream 1160678 33368625 ~ 33369105 (-)
G65679 NA other downstream 1638290 32886364 ~ 32891493 (-)
G65641 NA other downstream 1872764 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1919075 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 255278 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 285435 34838761 ~ 34841323 (-)
G66054 NA other upstream 309293 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 596242 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 791380 35344706 ~ 35349499 (-)

Expression


Co-expression Network