AMCG00020833


Basic Information

Item Value
gene id AMCG00020833
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34751379 ~ 34755314 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020833
ATGACGTATGACGATATCGGCGATGCCGGCCTGTCCGCCGTGGCGCTGTTCCAGTGCTCGCGGTGCCGGGGCTCCGTGCAGCCCCCGATCAAGCAGTGCCGCGGCGGGCATCTGATGTGCAAGAGCTGCCGGTCGTACCAGAAATTCTGTCCGAGCTGTTCCGGCTGTCACAGGATCAATGTCAGAAACTTAGCCATGGACAAAGTGGCCTTGATTCTTCGCTTTACCTACGACAGGTACTGTGGCGTTTCAGCCGCCGATGCCCTGTCGGCCAAAGCGGAAGACGTGATTGAGCTGTTCCAGTGTCCGGTGTGTTTCGACTTCGTGCTGCCGCAGATCCGGCAATGCAAGTCCGGGCACCTGATCTGCGGACGGTGTCGGCCGAAGCTGCGGCGCTGCCCGGTGTGCCTGCGCTCTCTGAGGGCCGGGGTCAGGAACGTGGCCATGGAGACGGTGGCTGAGACCCTTCCCGTCCCCTGCGAGAACCTGCCCACACAACCAGGACCTGCAGGCCAggccagagcagagcagagggGCATCTCCCATCAGGTATTGCTGGGGCAAGGGATGGAAGGGACTGGGGCCAGGGGGGCAGCGACCTCCATGTGGAATCACGTCTGTAACTTTTgctgctgtctgtgctgtgtgataTCCATGACGAGGGAGCTGGATTCGTACTACCAGACTGTACAGGATGAACTGGAGCCCACTTGGGTGTCAAATTCAGCTACGCTGTTGGAATTGCTCTTCACCATTCCCTTGACGCGCTGATGTTATACCAGATATAAATCATGTGGGGCTGACTGGGACTCTGCACTGTAACCATATGTAAGTGAATGTGAAGGCTGTGTAGATATTTTAGAAACCAAACCTCTCCAATTTGTTCCAAACTGAGTCAAAGCTAAATCAAAGCTGTTTTAGTAGGTTCACAcgtatttaaacaaattaactgaaacatatatgcagaaagaaagaaactttTAAGAAGACAAAACGTTTGAGAGAATTTTAAAGAGCTGAATAACTGTCCTgttctgtattgtgtgtttaaGTATAGCTTTTAGGAAATTGATCTTTTATTTATATCGAGGGCTTTCCAATATCTAATCTTAGAGAAGAATGATGctgtgttaatat

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020833 True 1137 mRNA 0.51 5 34751379 34755314

Neighbor

gene id symbol gene type direction distance location
AMCG00020834 LOC105015180,LOC106568058 coding downstream 9708 34729127 ~ 34741671 (-)
AMCG00020832 NA coding downstream 23015 34719704 ~ 34728364 (-)
AMCG00020828 NA coding downstream 177877 34569612 ~ 34573502 (-)
AMCG00020829 LOC106531303,LOC108443303,LOC103397456,LOC105014365 coding downstream 198053 34529783 ~ 34553326 (-)
AMCG00020830 NA coding downstream 229058 34519200 ~ 34522321 (-)
AMCG00020831 LOC102225713 coding upstream 7879 34763193 ~ 34770642 (-)
AMCG00020839 mxd1 coding upstream 31957 34787271 ~ 34791056 (-)
AMCG00020838 NA coding upstream 62899 34818213 ~ 34826629 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding upstream 134933 34890247 ~ 34891705 (-)
AMCG00020849 NA coding upstream 254577 35009891 ~ 35023812 (-)
G66004 NA non-coding downstream 1229 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 2050 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 4018 34746941 ~ 34747361 (-)
G65957 NA non-coding downstream 235481 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 331189 34416657 ~ 34420190 (-)
G66087 NA non-coding upstream 143470 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 248264 35003578 ~ 35077562 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding upstream 324364 35079678 ~ 35095653 (-)
G66154 NA non-coding upstream 379664 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 497088 35252402 ~ 35252669 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 511682 34222315 ~ 34239697 (-)
G65756 NA other downstream 1382274 33368625 ~ 33369105 (-)
G65679 NA other downstream 1859886 32886364 ~ 32891493 (-)
G65641 NA other downstream 2094360 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 2140671 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 53290 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 83447 34838761 ~ 34841323 (-)
G66054 NA other upstream 107305 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 394254 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 589392 35344706 ~ 35349499 (-)

Expression


Co-expression Network