AMCG00020837


Basic Information

Item Value
gene id AMCG00020837
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34838761 ~ 34841323 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020837
ATGTCGGCGCACGCGCTGCTGCTGGTGCCGGAGCGCGAGCTCATGGGCGACCTCGCGCACAGGACCCGGGGCGCCCGCGCGCTGCCCGTCCCCGCGGCCATCACGCGCTTCCGCCGCGCGCCCGGCGGGGGGTACCTGTCCACGGAGGACTGGCACGACATCGTCCGCAGGCGGCAGCTCGCCAACGCCAAGGAGAGGCAGCGGGTACGGGTGTGTGCAGGGCAATGCGTGCGGATACTGCTGCGGCTAATGACGatcCGGAACCTGAACAGCATGTTCTCGACTCTGAAGATGATGGTGCCACTTGTGCCACGGGACCGCAAGCCCAGCAAGGTGGACACCCTGCGTGCTGCAGCTGAGTACATCCGCCTGCTGCTGGGGGTACTACAGGACAGCGGGGGGGCGCAGaggCTGGAGAGCGTGGTGGGGACGGAGATGCCCGAGGGGATCACGATGGCGGTTCCCATGATGGCGGCGGGCGTTGCTGGGGGCAACGGGCTGCTGATGGGGGCGGAGGCGGGTTGCAGGGGAGAGCTGGGGGGGGCATCGCTGCTGCTGCACCATTGCGTCATGCCAACCTACATCATCCAGCTGCCCCCCGAGCACAGCCTGGGTCTGTGCCGGAAGGAATCTCCattcgttattattatttattgaatgtgtttatatttttcttgtgaaGCTAGTGGacaatgcaaatgttttgaCTTATTTAAAGTTATCAATTTTGAGTGAAAgttactgtgtatatatttatatctattttttgtaCTTCTGAGTTCTGTTGTGCATTGTTGGCTGCGTGTTACTCATCAGTTGTTTATCAAGCATCTGTCAATAAACCGGTTGATCAGA
>TU82573
CTGCCCGTCCCCGCGGCCATCACGCGCTTCCGCCGCGCGCCCGGCGGGGGGTACCTGTCCACGGAGGACTGGCACGACATCGTCCGCAGGCGGCAGCTCGCCAACGCCAAGGAGAGGCAGCGGaggCTGGAGAGCGTGGTGGGGACGGAGATGCCCGAGGGGATCACGATGGCGGTTCCCATGATGGCGGCGGGCGTTGCTGGGGGCAACGGGCTGCTGATGGGGGCGGAGGCGGGTTGCAGGGGAGAGCTGGGGGGGGCATCGCTGCTGCTGCACCATTGCGTCATGCCAACCTACATCATCCAGCTGCCCCCCGAGCACAGCCTGATGTTCCAGACCAACTGAGCATGGTGTGCAGTGCCTCGTTTCCCAGTATCTCCATGAAAAAAGAGCACAGTGTATGGGTCTGTGCCGGAAGGAATCTCCattcgttattattatttattgaatgtgtttatatttttcttgtgaaGCTAGTGGacaatgcaaatgttttgaCTTATTTAAAGTTATCAATTTTGAGTGAAAgttactgtgtatatatttatatctattttttgtaCTTCTGAGTTCTGTTGTGCATTGTTGGCTGCGTGTTACTCATCAGTTGTTTATCAAGCATCTGTCAATAAACCGGTTGATCAGA

Function

GO: NA

KEGG:

id description
K09066 FIGLA; factor in the germline alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020837 True 855 mRNA 0.59 4 34838761 34841323
TU82573 False 646 lncRNA 0.54 4 34838761 34841242

Neighbor

gene id symbol gene type direction distance location
AMCG00020838 NA coding downstream 12132 34818213 ~ 34826629 (-)
AMCG00020839 mxd1 coding downstream 47705 34787271 ~ 34791056 (-)
AMCG00020831 LOC102225713 coding downstream 68119 34763193 ~ 34770642 (-)
AMCG00020833 NA coding downstream 83447 34751379 ~ 34755314 (-)
AMCG00020834 LOC105015180,LOC106568058 coding downstream 97090 34729127 ~ 34741671 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding upstream 48924 34890247 ~ 34891705 (-)
AMCG00020849 NA coding upstream 168568 35009891 ~ 35023812 (-)
AMCG00020854 NA coding upstream 244494 35085817 ~ 35099957 (-)
AMCG00020851 NA coding upstream 259684 35101007 ~ 35111425 (-)
AMCG00020852 NA coding upstream 283092 35124415 ~ 35127755 (-)
G66004 NA non-coding downstream 88611 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 89432 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 91400 34746941 ~ 34747361 (-)
G65957 NA non-coding downstream 322863 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 418571 34416657 ~ 34420190 (-)
G66087 NA non-coding upstream 57461 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 162255 35003578 ~ 35077562 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding upstream 238355 35079678 ~ 35095653 (-)
G66154 NA non-coding upstream 293655 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 411079 35252402 ~ 35252669 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 24467 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 599064 34222315 ~ 34239697 (-)
G65756 NA other downstream 1469656 33368625 ~ 33369105 (-)
G65679 NA other downstream 1947268 32886364 ~ 32891493 (-)
G65641 NA other downstream 2181742 32655134 ~ 32657019 (-)
G66054 NA other upstream 21296 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 308245 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 503383 35344706 ~ 35349499 (-)
G66279 NA other upstream 809657 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 853645 35694968 ~ 35696969 (-)

Expression


Co-expression Network