AMCG00020849


Basic Information

Item Value
gene id AMCG00020849
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35009891 ~ 35023812 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020849
CTTGCCTGGCTGTGTGGGGGCTCAGGGCGGTGCGGCTCCCAAACAAGTTTCCCGTCTCCGTGCGAAGCAGAAGTCAGCTCTCCTCGGGACAACACAACGGAGAAGAGTCGAGACTTTGAGAGCAGTAGACATGGACTCTACAGAAGAGCCTTCAGGAGAGAGGGAAGTGGTTCCAATGGAAGTCGACGGAGAGCCAGGGGAGCTTGCCTCAGAAACGACCACAGAAAAAGTCCCCTGCAAGGTACACGATTCCCGGGAGGGACCCAGACAGGAGCAGGCAGGCCAGGAGTCCCTGTTGGGCGATGCAGCTGCTAAGAGCTCGGGATTGAAACCTAGAATGGACATGACTAGAGAAGAACTGATTGAAGAACTTGCCAAAATGGATGAAATTGTGAAGAGACTTGAGGAATTGAACCGAGTAAAATCAGCCACAAAAGATGCACAGATGTTGACTGCCAACATAGAAACAAATGTGGAAAACACATCGCCGATAGAGGAGACAATTGATCAAATGAATGACGGAGACCCAGTGGCAGTTTCTCGGCAGGAGGAGCTCACGCAGGGCACTGACGCAGACAGCGCAGACATGTCGAACCGCTCTCAGGACAGTTCTCAAGTGAAAGAGCTGCTTTCAGATTCAACTGCACCAATGGGGGACCAGAAGAGCTCAACCCACAAACACAGAAACGCAGAAAAGAGCCCTACAAAGTCCTCTGATGAAGACCTGATGAGTTTCAATAACTGTGGCAGACACGCAGACACGCATCAAAAGAGGTCCACCAGCAGCGAGTGCAGCAGGGAAGCGAGGGAGCTGAGCATGAGTTTCCTGACGGAGATGAAGAAAGCCCCAGGTTGCAGCACCTCCTTGGGAAAACTGGAATTCGGACGCAATCACACTGTGCTCGTAAACGTGGATGCTTACAACAGCAAAAAAGCCCTAATACCCCAAACGGGACGAGACCTGTGGAGCAGTGACTATGTGAGAATGCCGTGCTCTGATTCGAGCCACTACACCAAAGGCACGTTTATTCCGGGGGAAGAAAGTCGCTGGAAGGCCATTAAGAAAAGCCTGGAGAAGCTGCCCCAGAAACCTTCTGTTCAGGACGTCGAGAAGGCGATATTGAAGTACAACCCGAAGTACAAGAATGACTGGAATTTTGATGCGCTGCATTCGTTTTTCGAGCACTTTCCGAAGCAATACAGAGAAACTCACTCAAGGACTCTATACAAGATCGCAGAGCTGGCTCTCCAACTCCCTAAGTTGTGCCCAAAAGCCATCCCCTTGTTGAAGCAGGGCCGAGACCATGCCATCACTCTGTCCCAGATGCAGATCGCCTGCCTGCTGGCCAATGCCTTCTACTGCACCTTCCCCTTCCGCAACAGCACCAATCCACGCGCCGAGTACGCCAACTACCCCGACATCAACTTCCACAGACTGTTTGGACAGTGGTCAGAAAGGAAGCTGGAGAAATTCAAGACAATCTTCCATTACTTCAAGACTGTGACAGACAAAGAGCCCCATGGCCTGGTGACCTTTGAGAGACGACATCTGACAAAACCCTACTCATGGGATTGTGCCAATGAAAAACTGACTGACTTGCATGTTACAGCTGAGGGTAACATTGAGACCGAGGGCAAGGAGATGCTGCAGgtggaCTTTGCCTGTAAACTGGTGGGTGGAGGGGTGCTGGGCTCTGGACTGGTGCAAGAGGAGATCCGCTTCCTCATCAACACAGAGCTCATTGTGTCCCGGCTCTTCACCGAAAAACTGGGGGACCAGGATTGCCTGCGCATCATCGgaACGCAGCGCTACAGTATATACTCCGGCTACAGCGACAGCTACAAGTGGGACGGACCTTTTGAAGATCTGACTCCACGTGATGAGTGGCACAGACGCATTACAGAAATCGTGGCCATTGACGCACTTGAGTTCAAACACTACAACGAGCAGTTTAATATTGGCAAGGTGAATCGAGAGCTCAACAAGGCTTTCTGTGGATTCCAGGGAGATCGCAGAACAGACCCATCACTGCAGTCTGCCGTCGCCACTGGGAACTGGGGCTGCGGGGCCTTCAAAGGAGACGCCAAACTCAAAggtgtttgtgtgggggggaaCAATGTCAAAGGCAGGGATGGGCAGTGCTCTGGCATGTACTGGGGAATTAAAAGGCCTGCGGAGAAGAGAGAGTGGCTGCAGGCAGCTCTGATCCAGATGATGGCCGCCTCTGCAGCCAGGAGAAACCTTGTGTACTTCACTTTCGGAGACCAGGATCTGAGAGGGAAACTCGAAAACATTCACAGCTTCCTGCGTGAGCAGAACGTGACAATGGCCAGACTGTACAGCGTGCTGGAGATGTACTGCAGAAAACCGGGCCACTCGAGAGAGCCGAACGACCTTTACACGTTCATTTCCAACAGCATTCTGGACACCAAGAGCAAGCACTGAGGAGGGCAACTGAAATACCAGCGGCAAGAGCCAGCCCCGCTTGGTCTCTGTCCAGCATCAACTGGCCGAGGGCACGACTTTAAACTGCGGCTTTAAACAACTCTAAATCGCAACTGATTAGATCAATAGATCTAGTcaaccaatacaaaataaaatgttacatatgAGTATGAATCCACTCTGAGGTTATTGGATTTTGTTTAATCCCCggacaccc

Function

GO: NA

KEGG:

id description
K07759 PARG; poly(ADP-ribose) glycohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020849 True 2663 mRNA 0.52 17 35009891 35023812

Neighbor

gene id symbol gene type direction distance location
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding downstream 118186 34890247 ~ 34891705 (-)
AMCG00020838 NA coding downstream 183262 34818213 ~ 34826629 (-)
AMCG00020839 mxd1 coding downstream 218835 34787271 ~ 34791056 (-)
AMCG00020831 LOC102225713 coding downstream 239249 34763193 ~ 34770642 (-)
AMCG00020833 NA coding downstream 254577 34751379 ~ 34755314 (-)
AMCG00020854 NA coding upstream 62005 35085817 ~ 35099957 (-)
AMCG00020851 NA coding upstream 77195 35101007 ~ 35111425 (-)
AMCG00020852 NA coding upstream 100603 35124415 ~ 35127755 (-)
AMCG00020860 NA coding upstream 165708 35189520 ~ 35197646 (-)
AMCG00020861 NA coding upstream 211939 35235751 ~ 35238599 (-)
G66087 NA non-coding downstream 66925 34898784 ~ 34942966 (-)
G66004 NA non-coding downstream 259741 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 260562 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 262530 34746941 ~ 34747361 (-)
G65957 NA non-coding downstream 493993 34514368 ~ 34515898 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding upstream 55866 35079678 ~ 35095653 (-)
G66154 NA non-coding upstream 111166 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 228590 35252402 ~ 35252669 (-)
G66228 NA non-coding upstream 405372 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 409466 35433278 ~ 35433565 (-)
G66054 NA other downstream 144586 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 168568 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 195597 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 770194 34222315 ~ 34239697 (-)
G65756 NA other downstream 1640786 33368625 ~ 33369105 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 125756 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 320894 35344706 ~ 35349499 (-)
G66279 NA other upstream 627168 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 671156 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 790061 35813873 ~ 35819830 (-)

Expression


Co-expression Network