AMCG00020851


Basic Information

Item Value
gene id AMCG00020851
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35101007 ~ 35111425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020851
GCTGAAGCGAGTGGTTTATTCAGTGAATTACACAAGTTATGCAAAACACATTGTACAATATCATTCGCTGcgtgtttttatatttacacgTATATAATATTCCCCAATCgtttttttaaagagatatATAAATCATGGAGAGATCTGATTAGCtacaacaaaacatttgtattagtGCATTCCCAAGACCACAGGGTTTCATGATGGAGTAGGTTTATGGGGTAGGAGACCGGCAGAAGtgctgtgtttgcttgtttatgaACTGCGATGCGGATACAAGACAATTCATACCGACGGACACACTTCTCTTTCAACGCCCACCTAAAAATCAGCGAGGCAGTCATATGACCGCCCGGCCCGAGTTCAGGGTTACTTTCCACTTCCTCAAAGTTTGCGCCAGCAGCCCCTCTGCGCTTTCAGACTCACTGCGTGTTTGTCTTTCGTCGCGCCCGGGCGAGTGCATGCTGCGCAGCCCGACACAGCGGCCGCTTCTGTGGAGAGAGACTGAGCGGGACAGCCCGATGGCCGGCTCGGAGGCGACGGTGTCTCCCGGGGTAGAGGCTCGGTGGCGGGGCCGCTGCCGCACTCCCACCGCGGTGCTGCTGGTGCTGTGTACCTGTCTGCTCAGGTGCGCCGGCTGCACCAAGCCCAGCAACATCGTGCTCATTCTCACGGACGACCAGGATGTGGAACTGGGAGGGATGACGCCCATGAAGAAGGCCCGAACTCTGATAGGTGATTCTGGAGCCACCTTCTCCAACGCGTTCACAGTGACGCCACTGTGCTGTCCCAGCCGCAGCAGTATCCTCTCAGGCAAGTACCCTCACAACCACCAGGTGCGGAACAACTCCCTGAGTGGCAACTGCAGCAGCCCGGCCTGGCAGCGGGAGCAGGAGACGCAGGCCTTCCCTGTGTACCTGCACAAGCTCAACTACCAGACCTTCTACGCTGGCAAATACCTCAACCAGtatGGGAAGCCTCAGGCAGGAGGCGTGAGTCATGTACCGCCTGGCTGGGACCAATGGCACGCACTGgtGGGGAACTCTCAGTACTACAACTACAGCCTGTCTGTGAACGGCAAGGAGGAGCAGCACGGGGACCACTACGCCACAGACTACCTCACCGACCTCATAGTAAACAGGTCCGTGGAGTTCCTGGACCACCGCAGGAAGAACCAGCCGTTTTTCCTGATGCTGTCTTCCCCCGCGCCCCATTCCCCCTGGACCCCTGCCCCCCATTACCAGGACTCCTTTGTCAGCACCAAGGCCCCTCGGGACGGCAGCTTCAACAAGCCCGGCGGCAAGGACAAGCACTGGCTCCTGAGACAGCCTCACAGCCCCATGGCCAACAGCTCCATCGACTTCCTGGATAATGCATTCCGTCGCAGGTGGCAGACCCTGCTGTCTGTGGATGACTTGGTGGAGAAGGTAGTGCTCAAGCTGCAGGAGTTGAAGGAGCTGAACAACACCTACATCTTCTACACCTCCGATCACGGCTACCACACAGGTCAGTTCTCGCTGCCCATTGACAAGAGGCAGCTGTACGAGTTCGATATCCGTGTCCCGCTGATGGTCCGTGGCCCAGGAATCAAGCCCAACCAGACCCTGCAGGGACCAGTGTTGAACATTGACCTGGGCCCCACCTTCCTGGACATTGCGGGGGTCGACGTGTCCCGCACCACCATGGACGGACAGTCTTTCCTGCCCCTTATGGCCCCTTCTCTGCGCAATGGCACCTCAAGGCCCTACTTCCTGGTTGAGTACACAGGAGAAGGACACACTGACCAAGACCCCGCCTGTCCTTTGTTGGGCCCTGGACTTTCTCAATGCTTCCCAGACTGCGTGTGTGAGGATGCCTTCAACAACACGTACGCCTGCGTCAGGACACTGAGCAGCGTCAACCTGCAGTACTGCGAGTTTGCGGACACTGAGTCCTTCGTGGAGGTGTAcaacttgacctctgacccccacCAGCTGGAAAACATTCTGAAGAAAGTGGACCCCAGCCTCCTGCAGAGCATGAACCAGCGGCTCATCCGCCTGCAGTCCTGCACGGGCGCTGCCTGCAGAGACACCAAGCACTGAGTCTCGGCCGGCACAGGCAGCCAGGATGTGAAGCACTTTCCCTCGGTGGTGGTGAAAAGCAGATAAGTCTGCAAGTCATCAATGTGAAACCAAAGActgtacttttttgtatttttttcctctaattgtgttttttttttttttttgtaatgatcacaagctttttaaatgaataaggGATGAAGGAGGAGGCGGTGGTGTGGGTGAATGCAGAAATGTCCCAGCCCAGTAATAACAACAACTGCAATAATTATTAATGATGATAATTTTACTCTGCGCTATGGATCGATTGCAGCAAAAGGAGGACAAGTGTTTGTTGTCATGGGATGAGATCAAACCATCTGTAAAGACAGTGAATGTGCACAGTCAGATTTTTTTGCTAAAGCTGTGATGGTTGGGCAGTGGTTGATTACACTAGATTTGCTTTCACTCAGTCCTGACCTCAGGgtgtgtaaaatacaataatcactttttttgtattcttttttttttttatcattaccTCCCTCAACACAAGCTGTGATTACCATTCGAGGTGTTTGCTTATTTGCTAATTAATGATTAGCAAGTGGCTTGTAGACATTGTATgggacattgttttgtttgcttacgataaaaaaattaaaataaaattatttaaaaggacaGCCAATGGCTTATCATGCGTTATTAAGCCACGTGGTTCACC

Function

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function

KEGG:

id description
K01137 GNS; N-acetylglucosamine-6-sulfatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020851 True 2772 mRNA 0.52 14 35101007 35111425

Neighbor

gene id symbol gene type direction distance location
AMCG00020854 NA coding downstream 1050 35085817 ~ 35099957 (-)
AMCG00020849 NA coding downstream 77195 35009891 ~ 35023812 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding downstream 209302 34890247 ~ 34891705 (-)
AMCG00020838 NA coding downstream 274378 34818213 ~ 34826629 (-)
AMCG00020839 mxd1 coding downstream 309951 34787271 ~ 34791056 (-)
AMCG00020852 NA coding upstream 12990 35124415 ~ 35127755 (-)
AMCG00020860 NA coding upstream 78095 35189520 ~ 35197646 (-)
AMCG00020861 NA coding upstream 124326 35235751 ~ 35238599 (-)
AMCG00020862 NA coding upstream 142369 35253794 ~ 35256200 (-)
AMCG00020866 NA coding upstream 188960 35300385 ~ 35310071 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding downstream 5354 35079678 ~ 35095653 (-)
G66123 NA non-coding downstream 23445 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 158041 34898784 ~ 34942966 (-)
G66004 NA non-coding downstream 350857 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 351678 34749127 ~ 34749329 (-)
G66154 NA non-coding upstream 23553 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 140977 35252402 ~ 35252669 (-)
G66228 NA non-coding upstream 317759 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 321853 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 324865 35436290 ~ 35502312 (-)
G66054 NA other downstream 235702 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 259684 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 286713 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 861310 34222315 ~ 34239697 (-)
G65756 NA other downstream 1731902 33368625 ~ 33369105 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 38143 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 233281 35344706 ~ 35349499 (-)
G66279 NA other upstream 539555 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 583543 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 702448 35813873 ~ 35819830 (-)

Expression


Co-expression Network