AMCG00020853 (H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744)


Basic Information

Item Value
gene id AMCG00020853
gene name H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35149568 ~ 35170179 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020853
ATGGCAGGAGGGAAAGCTGGAAAAGACAGCGGCAAGGCAAAGGCTAAAGCGGTGTCTCGCTCACAGAGGGCTGGTTTGCAGTTCCCAGTGGGTCGTATCCATAGACACTTGAAGACCCGCACCACAAGCCACGGGCGTGTGGGGGCTACAGCAGCCGTGTACAGCGCCGCCATCCTTGAATACCTTACTGCTGAGGTGAGGCTCTCCGAGGAACATGGCCATTATACGAGGAGAGGTGTCATTCCTCACATTCACAAATCCCTCATTGGGAAGAAGGGGCAACAGAAGACTGCATAGAGGAGCGGGTGAAGGGGGCGGCCCTCTCGGCGCAGAGCGGGGACGGGCTGCAAGATTATTccttttcccatttattttttttttattttttttaaaccgtaGTTCAAGTTCAAGGAACGAttgttaggttttttttgtttgtttgttttggtttttttttgagttgtaataatacaaaacaagaagaagaaaaaaaaactgcaaaaggaaaaaaaatactatataaaacatttgtacgttcttttagatttttgtttgatggacaggggaaaaaaatgtattgtcatgTTGTGGACGCAAATTTGTTGATTGGCTAGGGGTTCAACAgtgttttatacaaaaaaaatggaattgttAAACCATTTTTTACAAAAGAGACAGTCTCCTGGTTTTCTTTTGGCTTTACTAGGGTGAAAAGACCTTGAGGGTTAAATTGATCAGCCATCTAGCTTCATGTGGTCAACGCCTTGATTCTAATCAGCTGAACTAGCCGTTTTGGCAAGTGTCCTAAACACAGCACTACACTGGACTCTCTGCCCCTGTGTGATGCCTCCGTACACTGTGCCACACttcttttaaacacacactgatctatacatgtgtgtgtatgtatatgtgtatatatatatatatgtgtgtgt
>TU82718
TCGCGCACAGGCTCGCGGAGGGGTTtattgtttctctctgtctcgaGCGGAAAATTGTCTCCGACCTCTCGATTCCTGACaggaatttcaataaaatataataaataaacagcgaAAATGGCAGGAGGGAAAGCTGGAAAAGACAGCGGCAAGGCAAAGGCTAAAGCGGTGTCTCGCTCACAGAGGGCTGGTTTGCAGTTCCCAGTGGGTCGTATCCATAGACACTTGAAGACCCGCACCACAAGCCACGGGCGTGTGGGGGCTACAGCAGCCGTGTACAGCGCCGCCATCCTTGAATACCTTACTGCTGAGgtgTTGGAGTTGGCAGGAAATGCCTCCAAAGACCTGAAGGTGAAGCGCATCACCCCTCGCCACTTGCAGCTCGCCATCCGTGGAGACGAGGAGCTCGACTCACTCATCAAGGCCACCATTGCTGGGGGAGGTGTCATTCCTCACATTCACAAATCCCTCATTGGGAAGAAGGGGCAACAGAAGACTGCATAGAGGAGCGGGTGAAGGGGGCGGCCCTCTCGCTGCGCTGTTACAGGGACGGGCGCAGAGCGGGGACGGGCTGCAAGATTATTccttttcccatttattttttttttattttttttaaaccgtaGTTCAAGTTCAAGGAACGAttgttaggttttttttgtttgtttgttttggtttttttttgagttgtaataatacaaaacaagaagaagaaaaaaaaactgcaaaaggaaaaaaaatactatataaaacatttgtacgttcttttagatttttgtttgatggacaggggaaaaaaatgtattgtcatgTTGTGGACGCAAATTTGTTGATTGGCTAGGGGTTCAACAgtgttttatacaaaaaaaatggaattgttAAACCATTTTTTACAAAAGAaaaaaaaaaaaaaaaa
>TU82719
TCGCGCACAGGCTCGCGGAGGGGTTtattgtttctctctgtctcgaGCGGAAAATTGTCTCCGACCTCTCGATTCCTGACaggaatttcaataaaatataataaataaacagcgaAAATGGCAGGAGGGAAAGCTGGAAAAGACAGCGGCAAGGCAAAGGCTAAAGCGGTGTCTCGCTCACAGAGGGCTGGTTTGCAGTTCCCAGTGGGTCGTATCCATAGACACTTGAAGACCCGCACCACAAGCCACGGGCGTGTGGGGGCTACAGCAGCCGTGTACAGCGCCGCCATCCTTGAATACCTTACTGCTGAGgtgTTGGAGTTGGCAGGAAATGCCTCCAAAGACCTGAAGGTGAAGCGCATCACCCCTCGCCACTTGCAGCTCGCCATCCGTGGAGACGAGGAGCTCGACTCACTCATCAAGGCCACCATTGCTGGGGGAGGTGTCATTCCTCACATTCACAAATCCCTCATTGGGAAGAAGGGGCAACAGAAGACTGCATAGAGGAGCGGGTGAAGGGGGCGGCCCTCTCGCTGCGCTGTTACAGGGACGGGCGCAGAGCGGGGACGGGCTGCAAGATTATTccttttcccatttattttttttttattttttttaaaccgtaGTTCAAGTTCAAGGAACGAttgttaggttttttttgtttgtttgttttggtttttttttgagttgtaataatacaaaacaagaagaagaaaaaaaaactgcaaaaggaaaaaaaatactatataaaacatttgtacgttcttttagatttttgtttgatggacaggggaaaaaaatgtattgtcatgTTGTGGACGCAAATTTGTTGATTGGCTAGGGGTTCAACAgtgttttatacaaaaaaaatggaattgttAAACCATTTTTTACAAAAGAGACAGTCTCCTGGTTTTCTTTTGGCTTTACTAGGGTGAAAAGACCTTGAGGGTTAAATTGATCAGCCATCTAGCTTCATGTGGTCAACGCCTTGATTCTAATCAGCTGAACTAGCCGTTTTGGCAAGTGTCCTAAACACAGCACTACACTGGACTCTCTGCCCCTGTGTGATGCCTCCGTACACTGTGCCACACttcttttaaacacacactgatctatacatgtgtgtgtatgtatatgtgtatatatatatatatgtgtgtgtatgtgtatagatCAATTTCCCCTAGCGGTTTTGTatccattcattttattcactgtgCAGACGAGTACTTCCGCTAATCTATATTTATGCCCTAGAGAGAGACTGAAGTGAATTGGAAATGATTTGGACAGAAAGAGGAGACTGCCCAAACGGGCAGTGAGTTGGAAAGGCACACTCTGAAATGCCACATCCTTATCTTATACAAAATGTTCTGATTCTCTTTCCATGGGAGCACTGGCACACAGTAGTTTACATGTATACCGAGGTCTAGGATTAAATCTTCCTGGTGTCACTCGCGACTCGTGCTTCAGTGGAGGTGGCCTGACTTTGAGAACGCCTCTCTGGGTCTCTGGTCTTGCTGAGCGGCAAATGTTCTCCCATCTGCGGTGCGCGTCGCAAAGGGAGAGATCTGAGCTGTGTGGAGCAGCTGTGATCACGTCCGATAGCGTTCCTCTTCAGGGTCCGGTGTGTGACTGCGGTCATAAGGTTTTACAGTGTACTGTGGTATGACCTTAAAACCTTGTTTGCGGTGTATCACTCGAGCTGCTGAGGTTTCAAAGCTAAAGTGTGATACTGGTGCAGGGAGAGAGGTTGGTGAAGAAGACTGAAGTATGAATGTGGCTTCATAATAAACCTACTTCCAGTCTGTAGAactatggaaaataaaatctgttcctgcataagcacacaaaaaagcactgaataaaaaaatacacaaagg

Function

NR:

description
PREDICTED: histone H2A.V

GO:

id name namespace
GO:0001740 Barr body cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020853 False 938 mRNA 0.43 5 35163535 35167869
TU82718 False 916 TUCP 0.45 6 35149568 35170179
TU82719 True 1886 TUCP 0.45 5 35162814 35170179

Neighbor

gene id symbol gene type direction distance location
AMCG00020852 NA coding downstream 21813 35124415 ~ 35127755 (-)
AMCG00020851 NA coding downstream 38143 35101007 ~ 35111425 (-)
AMCG00020854 NA coding downstream 49611 35085817 ~ 35099957 (-)
AMCG00020849 NA coding downstream 125756 35009891 ~ 35023812 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding downstream 257863 34890247 ~ 34891705 (-)
AMCG00020860 NA coding upstream 19341 35189520 ~ 35197646 (-)
AMCG00020861 NA coding upstream 65572 35235751 ~ 35238599 (-)
AMCG00020862 NA coding upstream 83615 35253794 ~ 35256200 (-)
AMCG00020866 NA coding upstream 130206 35300385 ~ 35310071 (-)
AMCG00020865 NA coding upstream 191280 35361459 ~ 35372256 (-)
G66154 NA non-coding downstream 14005 35134978 ~ 35135563 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding downstream 53915 35079678 ~ 35095653 (-)
G66123 NA non-coding downstream 72006 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 206602 34898784 ~ 34942966 (-)
G66004 NA non-coding downstream 399418 34749444 ~ 34750150 (-)
G66181 NA non-coding upstream 82223 35252402 ~ 35252669 (-)
G66228 NA non-coding upstream 259005 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 263099 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 266111 35436290 ~ 35502312 (-)
G66284 NA non-coding upstream 532584 35702763 ~ 35703073 (-)
G66054 NA other downstream 284263 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 308245 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 335274 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 909871 34222315 ~ 34239697 (-)
G65756 NA other downstream 1780463 33368625 ~ 33369105 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 174527 35344706 ~ 35349499 (-)
G66279 NA other upstream 480801 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 524789 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 643694 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 805585 35975764 ~ 35986712 (-)

Expression


Co-expression Network