AMCG00020860


Basic Information

Item Value
gene id AMCG00020860
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35189520 ~ 35197646 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020860
CTGGCTCCAGCAGAGTGAGTCACATGACCCTCTGGACCTGCAATAAAACACCAGCACTCTCCTGCTTTACACTCAGTGTGCCTCCGCAGTAAACATGGCAAGCGGTTTGAGAACAGCAACATCTCCTAAGCCGAAAGCAAAAGTAATGCTGCAGACGTCCAACAACAAAATAGTCAAAATTGAGACGTTCCCAGCACTGCAGATCTGTGCGAAAGACCTGCAGATACAAGCAGTACACCCAAATGAAGTGGCTGTGACACAGCACTTCTACAATGAAGACCAAGACCAGACCAATATCGCTTTTGCCTTTTGGAAGAACAACAAATACTACTACCCGTTTGTGGAGGGAGAGCAGCTAAAGctGGATGAAAAGGAAGGTCTGCAAACCCCCATAGACTCGAAATATAAATTCAAGTGGAACTGTGAGAAGATCGAGTCCGTTGCCAAGCCTGACTGGTTCCTCACTATGGAAGAGGGAGGGACGGTCAAAATAGACACAAGATCAGACTCCGTCTTCAAGCAGTCAGTGATCTCAGAATCTTAAACATAAACATCATCAACGAATTATTAAAAGTACTGGGAcatccagaaaaaaaatgtaaaaaaaaaacgaatacacCCCTAAATACATAAGTACAGCAGAACATCATGAATTGAATTGGGCGTAGGCCTGAGTGACAGCTGGGCTTGCTAGGGGGCTGGAGTGGGAGGCTGTCACAGCGTACTGTCGGGTGGCGAGCCAAGAGTGTGTCCCGCACATTGAGCTGAGCCAAGATATGAGCCGAAACAGAAAACTTCATTAAAGTTCATTAAAGGAGAAATTTAGGGTCATTATAGGAGAAATTTGTTCACAGCATTTGCAGTCTGGCACCTCAATCTGGAAACGCTAGCAAAAACAGGTACACCAAAAAACCCAACACATTCATAGTCACAGAGGTCAGTCTGAAGACAATCTCCAATCTGTTTTGCAAGATGCAAGTTTTTCCTCATTACGTGTTGTGGAGTAGGCAAGCCTAACTTCCCTCCGGCATAGTTTCACCACAGCTGGCCTACGCTACAGTGTTATCCCGAATACCATAATGTCTTCACTGGGGGTTATTGCTGCCTTTGGTAAGATTCTGGTAAGATTCAACAGCCATGGTCTCTGCTCTGGCTTGTCCCACTGCTCTTAGTTCCAGTTTAgttgtgggggggaggggggccgATGAAAATACCAGTGTAGGACATTTTTGTATCTGCCTGTGTAGGAGTAACTTGCTCTTCGAGGAGGATGGTCATTAGGGTAGTATGACCACAAACACAACCAACGCAATGTTACATTGAATAGTCTACATGTTGTTGTCTAGCGTTTAGTTTTTAGCTGCATCTACAAATCACCCTAACAAACACAGTATATCTTTTAATAGGTCTGAAATATTATTTCCCCCTCCACTGACATGTATTCATTCCAActttttattactgttattatcaaGAATCTGACTTAACTAatcttgtattgttttactACACTAATGTATTCAAGTTATTcttgtaactttttttaaaatactaataacTATTATAATCTTTGATATTGTTCCTTTGATATGTATTGTAGCCATTCAGCAatgaaaactgtattaataaaacatgattttaa

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020860 True 1642 mRNA 0.42 4 35189520 35197646

Neighbor

gene id symbol gene type direction distance location
AMCG00020852 NA coding downstream 61765 35124415 ~ 35127755 (-)
AMCG00020851 NA coding downstream 78095 35101007 ~ 35111425 (-)
AMCG00020854 NA coding downstream 89563 35085817 ~ 35099957 (-)
AMCG00020849 NA coding downstream 165708 35009891 ~ 35023812 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding downstream 297815 34890247 ~ 34891705 (-)
AMCG00020861 NA coding upstream 38105 35235751 ~ 35238599 (-)
AMCG00020862 NA coding upstream 56148 35253794 ~ 35256200 (-)
AMCG00020866 NA coding upstream 102739 35300385 ~ 35310071 (-)
AMCG00020865 NA coding upstream 163813 35361459 ~ 35372256 (-)
AMCG00020871 LOC104941581 coding upstream 242383 35440029 ~ 35445018 (-)
G66154 NA non-coding downstream 53957 35134978 ~ 35135563 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding downstream 93867 35079678 ~ 35095653 (-)
G66123 NA non-coding downstream 111958 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 246554 34898784 ~ 34942966 (-)
G66004 NA non-coding downstream 439370 34749444 ~ 34750150 (-)
G66181 NA non-coding upstream 54756 35252402 ~ 35252669 (-)
G66228 NA non-coding upstream 231538 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 235632 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 238644 35436290 ~ 35502312 (-)
G66284 NA non-coding upstream 505117 35702763 ~ 35703073 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 19341 35149568 ~ 35170179 (-)
G66054 NA other downstream 324215 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 348197 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 375226 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 949823 34222315 ~ 34239697 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 147060 35344706 ~ 35349499 (-)
G66279 NA other upstream 453334 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 497322 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 616227 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 778118 35975764 ~ 35986712 (-)

Expression


Co-expression Network