AMCG00020862


Basic Information

Item Value
gene id AMCG00020862
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35253794 ~ 35256200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020862
ATGAACAGCCACTGCTTGGACATCAGCTCAGCCATGAGCAGTGACAGTGCCAGCATGAGTATGGTGGAGGTGGACAGCCCATGGGCAGCTGAGaGCTGCTACGCAAGGGATGGCCTGTGCTCACACAAAGCGTGGCACCGCTTGGGCGAggggctggagctggagctgtcGGTCCAGCACGGCATGCACAGCATGAGGCAGGTGGCCACGCTGGTCATCGCCCTGGAGAGGATGAAGAACGTGCATGAGAAGACGCTGAGCACCGAGTTCACAGATGACGACCTGTTCAACATCCTCATGGACCAGATGGTGGAAGTGCTGGAGGTGTTTCCGGAGAAGCTTGCGCAAGAGCCTGTGTTCCAGCAACAGCAGACGGGCCTGGTTTACAGCTTGCGTGACCAGAGACAGAAGTGCTGGATTCTGAACGAGCTGCCAGGGCGGGCAGCTGAGCTGCTGGCTGTCACCCTGCAGGGACCCAATGCCTCCCGGAGAGTGCAGCTGAACCTGTCCACCTACATACCCCAGCCTATTGCCCTCAGGCAGGGCCAGCCTGTCACCCTGAAGATCGACGGGCGCAACCTCTACCTGTCCTGCTCCAAAGGCAACGGCAACCCCATCCTCCAGGTCGAGGAAGTGACTGACAAGAGCAGTCTGAGCACCCTCCACTCCAGCAGCGACATGGCACGCTTCCTCTTCTACAAGAAGGATGGCGGCAACTCCAACACCACCTTCGAGTCGGCCATGTTCCCCAGCTGGTACATCAGCACTGCCGTGCGTGATGAGCGCCGCCCGGTGGCCATGTGTTCCGAGGAGCAGTCCGATCGCATCATCAACTTCATGGTCAGCGCAGAGTGA

Function

GO: NA

KEGG:

id description
K04519 IL1B; interleukin 1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020862 True 855 mRNA 0.60 6 35253794 35256200

Neighbor

gene id symbol gene type direction distance location
AMCG00020861 NA coding downstream 15195 35235751 ~ 35238599 (-)
AMCG00020860 NA coding downstream 56148 35189520 ~ 35197646 (-)
AMCG00020852 NA coding downstream 126039 35124415 ~ 35127755 (-)
AMCG00020851 NA coding downstream 142369 35101007 ~ 35111425 (-)
AMCG00020854 NA coding downstream 153837 35085817 ~ 35099957 (-)
AMCG00020866 NA coding upstream 44185 35300385 ~ 35310071 (-)
AMCG00020865 NA coding upstream 105259 35361459 ~ 35372256 (-)
AMCG00020871 LOC104941581 coding upstream 183829 35440029 ~ 35445018 (-)
AMCG00020870 LOC102300863 coding upstream 190654 35446854 ~ 35485425 (-)
AMCG00020873 LOC105027009,LOC106585261,LOC106580343 coding upstream 330621 35586821 ~ 35591343 (-)
G66181 NA non-coding downstream 1125 35252402 ~ 35252669 (-)
G66154 NA non-coding downstream 118231 35134978 ~ 35135563 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding downstream 158141 35079678 ~ 35095653 (-)
G66123 NA non-coding downstream 176232 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 310828 34898784 ~ 34942966 (-)
G66228 NA non-coding upstream 172984 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 177078 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 180090 35436290 ~ 35502312 (-)
G66284 NA non-coding upstream 446563 35702763 ~ 35703073 (-)
G66327 NA non-coding upstream 515284 35771484 ~ 35771686 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 83615 35149568 ~ 35170179 (-)
G66054 NA other downstream 388489 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 412471 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 439500 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 1014097 34222315 ~ 34239697 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 88506 35344706 ~ 35349499 (-)
G66279 NA other upstream 394780 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 438768 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 557673 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 719564 35975764 ~ 35986712 (-)

Expression


Co-expression Network