AMCG00020867 (zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567)


Basic Information

Item Value
gene id AMCG00020867
gene name zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35344706 ~ 35349499 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020867
ATGAAAAAATTAATCTCTGGTAAATGTAGTGCTGAAACAGGGAACGGCAACAAGGCCCTGAACAGCCAGGCCCTGCCTGGGGACAGAGAGCCGGCCCTCAGCGCCAGTCTGAGCGGTTTGCTGTCGATCCTGCGGAAGCTGAAGAGCTCTCCGGATCAGGAGGTGCGGATCCTGCTGCTGGGGCTGGACAACGCGGGCAAGACCACCCTGCTCAAACAGCTGGCCTCCGAGGACGTCAGCCACATCACCCCCACGCAGATCTACGTCATCGACAGTGCGGACAGGAAGCGCTTCGAGGAGACCGGACAGGTGAGGCCAGCCTGGGCGTTTGTGTGGGGGTGA
>TU82781
ctcatgtctctctctctccttccttcctgATCAATCCCCCCTAAACCTGCCACTGTGAACGGgtctgacctctctctctccctgagcCAGGACTGCCCCTTTGTAAAGGCTTAACCATGGCAAAAGAACAGAAAGCTGTAGGGTTTGCTGTCGATCCTGCGGAAGCTGAAGAGCTCTCCGGATCAGGAGGTGCGGATCCTGCTGCTGGGGCTGGACAACGCGGGCAAGACCACCCTGCTCAAACAGCTGGCCTCCGAGGACGTCAGCCACATCACCCCCACGCAGGGCTTCAACATAAAGAGTGTGCAGTCTCAGGGCTTCAAGCTGAACGTGTGGGACATCGGGGGCCAGAGGAAGATCCGTCCGTACTGGAGGAACTACTTTGAGAACACAGACGTGCTGATCTACGTCATCGACAGTGCGGACAGGAAGCGCTTCGAGGAGACCGGACAGgagCTGGCCGAGCTGTTGGAGGAGGAGAAGCTCAGCGGGGTGCCTGTGCTGGTTTTTGCCAACAAGCAGGACCTGATGACGGCGGCACCGGCGGCGGAGATCGCAGAGGGGCTGAACCTGCACATCATCAGGGACAGGATCTGGCAGATACAGGCCTGCTCTGCTGTGACCTCCGAGGGGGTGCAGGATGGCATGACATGGGTCTGCAAGAACATCGCAAGCAAGAAGAAATAACAAGAGGGGCACAAGCAGATGAAAATCAGTCTCCAACCCTCTACTGTATATTCcttaacttatatatatataaaaga

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
ADP-ribosylation factor-like protein 3 isoform 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020867 False 342 mRNA 0.61 3 35347274 35349226
TU82781 True 764 lncRNA 0.55 6 35344706 35349499

Neighbor

gene id symbol gene type direction distance location
AMCG00020866 NA coding downstream 34635 35300385 ~ 35310071 (-)
AMCG00020862 NA coding downstream 88506 35253794 ~ 35256200 (-)
AMCG00020861 NA coding downstream 106107 35235751 ~ 35238599 (-)
AMCG00020860 NA coding downstream 147060 35189520 ~ 35197646 (-)
AMCG00020852 NA coding downstream 216951 35124415 ~ 35127755 (-)
AMCG00020865 NA coding upstream 11960 35361459 ~ 35372256 (-)
AMCG00020871 LOC104941581 coding upstream 90530 35440029 ~ 35445018 (-)
AMCG00020870 LOC102300863 coding upstream 97355 35446854 ~ 35485425 (-)
AMCG00020873 LOC105027009,LOC106585261,LOC106580343 coding upstream 237322 35586821 ~ 35591343 (-)
AMCG00020877 NA coding upstream 269125 35618624 ~ 35631985 (-)
G66181 NA non-coding downstream 92037 35252402 ~ 35252669 (-)
G66154 NA non-coding downstream 209143 35134978 ~ 35135563 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding downstream 249053 35079678 ~ 35095653 (-)
G66123 NA non-coding downstream 267144 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 401740 34898784 ~ 34942966 (-)
G66228 NA non-coding upstream 79685 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 83779 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 86791 35436290 ~ 35502312 (-)
G66284 NA non-coding upstream 353264 35702763 ~ 35703073 (-)
G66327 NA non-coding upstream 421985 35771484 ~ 35771686 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 174527 35149568 ~ 35170179 (-)
G66054 NA other downstream 479401 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 503383 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 530412 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 1105009 34222315 ~ 34239697 (-)
G66279 NA other upstream 301481 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 345469 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 464374 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 626265 35975764 ~ 35986712 (-)
AMCG00020911 NA other upstream 911494 36260993 ~ 36282529 (-)

Expression


Co-expression Network