AMCG00020876


Basic Information

Item Value
gene id AMCG00020876
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35694968 ~ 35696969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020876
GGTGTGGCTGCGATGCTGGTTCATGTATAAAAGGATGTGATGTACATGCTTCTGTAGAGAGGCTTCAACACTGCAGAGATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGCATTACCCTGGCTCATGTGGACCTTGTGAGCTCAGatttgtatCTGGGAAGCTCTTTTGTCAAGAGGGCGGTGGATGATGCGATTCTGTTAGTGGACCAAGCATACAAGTACTCCCGTGCTGTGTAAGTGACGAGCACACCTCCGGATCCACTGGTCTGTGATTTATTCTGATGTTTTAATTGGCACTTGACATCAGTTGCTTTGCAGAGATTATAATAtcccaaaacaacacaaatgttagacagtttgttaaaataaaaataaaaagcaccaaGAGACCACAGTATGAAGACCAACATgaacacttatttaattattaaaacacgATTTTTGCCTTGTGAATGTAGGGGACTTAAAACAGGTGTGTCTCTGCATGTGTCTGTTTCTATatttctttgtgtctgtttctatatatctgtgtgtctgtatcagATCTGGGCCAAAATAGctgtttttgatattttatttgtcaatGCCAACTCTTTCAAATtgttgaaatattgaaatatatattgtcaactgaagcaatttttttttaattttgaaaatatttatttgacaaaaacaaatattatttgaaagttatttaaaaataataaatggtcATTCTCCCTAAACATGTAGCACTAATGTTACATGAGTGTCAACAGTTGGACATGTCATTATCTCCtatattcttgtgttttgtaagaATGAAATGCCTTATCTAAATACATCTGTGTGAAAGAAGATAATCAGCCAGCTACATGCTATGCTAGTGGCATGTTGTGATTGGAACAAAGacaccaaacaggtgtacaaaacgtatataaatatatattatcttgtgttcttggttgtctgatatatgttcattttaacatatcaatgtctgcatgcatctgtgtgtgttcatgagAGTGAACATTTTGCTAcctgtttgtgttatttataatttc
>TU82877
AGGTGTGGCTGCGATGCTGGTTCATGTATAAAAGGATGTGATGTACATGCTTCTGTAGAGAGGCTTCAACACTGCAGTTCAGGTTCAGAGTCTGATGCTGGGCGTAGAGTGTGCAATCAATTTCTAACGAAGGGGCAACTTCTCGCAGCGGTCGGAGCTCACTGTTATCGAGGTCAGCTGTAATatcatAGATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGCATTACCCTGGCTCATGTGGACCTTGTGAGCTCAGatttgtatCTGGGAAGCTCTTTTGTCAAGAGGGCGGTGGATGATGCGATTCTGTTAGTGGACCAAGCATACAAGTACTCCCGTGCTGTGTAAGTGACGAGCACACCTCCGGATCCACTGGTCTGTGATTTATTCTGATGTTTTAATTGGCACTTGACATCAGTTGCTTTGCAGAGATTATAATAtcccaaaacaacacaaatgttagacagtttgttaaaataaaaataaaaagcaccaaGAGACCACAGTATGAAGACCAACATgaacacttatttaattattaaaacacgATTTTTGCCTTGTGAATGTAGGGGACTTAAAACAGGTGTGTCTCTGCATGTGTCTGTTTCTATatttctttgtgtctgtttctatatatctgtgtgtctgtatcagATCTGGGCCAAAATAGctgtttttgatattttatttgtcaatGCCAACTCTTTCAAATtgttgaaatattgaaatatatattgtcaactgaagcaatttttttttaattttgaaaatatttatttgacaaaaacaaatattatttgaaagttatttaaaaataataaatggtcATTCTCCCTAAACATGTAGCACTAATGTTACATGAGTGTCAACAGTTGGACATGTCATTATCTCCtatattcttgtgttttgtaagaATGAAATGCCTTATCTAAATACATCTGTGTGAAAGAAGATAATCAGCCAGCTACATGCTATGCTAGTGGCATGTTGTGATTGGAACAAAGacaccaaacaggtgtacaaaacgtatataaatatatattatcttgtgttcttggttgtctgatatatgttcattttaacatatcaatgtctgcatgcatctgtgtgtgttcatgagAGTGAACATTTTGCTAcctgtttgtgttatttataatttctttctgatgttttcCTGCTGTAGACTTGCACAAATATGTCACGGTgaaacagtgaacagtgaatTTGTGAATTAAATACGGTGCTTGAGATCTGtggttgtgtttgtgtagcGTAGTCTTTCCACCAGTTGTGCAGCTCTGAATTGATGGTACATATTTAAACAGTGG
>TU82880
AGGTGTGGCTGCGATGCTGGTTCATGTATAAAAGGATGTGATGTACATGCTTCTGTAGAGAGGCTTCAACACTGCAGTTCAGGTTCAGAGTCTGATGCTGGGCGTAGAGTGTGCAATCAATTTCTAACGAAGGGGCAACTTCTCGCAGCGGTCGGAGCTCACTGTTATCGAGAGATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGCATTACCCTGGCTCATGTGGACCTTGTGAGCTCAGatttgtatCTGGGAAGCTCTTTTGTCAAGAGGGCGGTGGATGATGCGATTCTGTTAGTGGACCAAGCATACAAGTACTCCCGTGCTGTGTAAGTGACGAGCACACCTCCGGATCCACTGGTCTGTGATTTATTCTGATGTTTTAATTGGCACTTGACATCAGTTGCTTTGCAGAGATTATAATAtcccaaaacaacacaaatgttagacagtttgttaaaataaaaataaaaagcaccaaGAGACCACAGTATGAAGACCAACATgaacacttatttaattattaaaacacgATTTTTGCCTTGTGAATGTAGGGGACTTAAAACAGGTGTGTCTCTGCATGTGTCTGTTTCTATatttctttgtgtctgtttctatatatctgtgtgtctgtatcagATCTGGGCCAAAATAGctgtttttgatattttatttgtcaatGCCAACTCTTTCAAATtgttgaaatattgaaatatatattgtcaactgaagcaatttttttttaattttgaaaatatttatttgacaaaaacaaatattatttgaaagttatttaaaaataataaatggtcATTCTCCCTAAACATGTAGCACTAATGTTACATGAGTGTCAACAGTTGGACATGTCATTATCTCCtatattcttgtgttttgtaagaATGAAATGCCTTATCTAAATACATCTGTGTGAAAGAAGATAATCAGCCAGCTACATGCTATGCTAGTGGCATGTTGTGATTGGAACAAAGacaccaaacaggtgtacaaaacgtatataaatatatattatcttgtgttcttggttgtctgatatatgttcattttaacatatcaatgtctgcatgcatctgtgtgtgttcatgagAGTGAACATTTTGCTAcctgtttgtgttatttataatttctttctgatgttttcCTGCTGTAGACTTGCACAAATATGTCACGGTgaaacagtgaacagtgaatTTGTGAATTAAATACGGTGCTTGAGATCTGtggttgtgtttgtgtagcGTAGTCTTTCCACCAGTTGTGCAGCTCTGAATTGATGGTACATATTTAAACAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020876 False 1049 mRNA 0.36 3 35695136 35696968
TU82877 True 1330 lncRNA 0.37 4 35694968 35696969
TU82880 False 1313 lncRNA 0.37 4 35694968 35696969

Neighbor

gene id symbol gene type direction distance location
AMCG00020879 NA coding downstream 4628 35679433 ~ 35690340 (-)
AMCG00020882 NA coding downstream 19068 35671530 ~ 35675900 (-)
AMCG00020881 NA coding downstream 36856 35637050 ~ 35658112 (-)
AMCG00020877 NA coding downstream 62983 35618624 ~ 35631985 (-)
AMCG00020873 LOC105027009,LOC106585261,LOC106580343 coding downstream 103625 35586821 ~ 35591343 (-)
AMCG00020878 usp39,LOC106585262,LOC106580344 coding upstream 43076 35740045 ~ 35746487 (-)
AMCG00020880 mat2a,LOC102784064,LOC101478089,LOC105026123,LOC106580346 coding upstream 62882 35759851 ~ 35765430 (-)
AMCG00020886 NA coding upstream 82074 35779043 ~ 35790548 (-)
AMCG00020889 NA coding upstream 104316 35801285 ~ 35810870 (-)
AMCG00020885 snrnp200,LOC106585548,LOC106579886 coding upstream 130313 35827282 ~ 35847057 (-)
G66259 NA non-coding downstream 192656 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 261403 35433278 ~ 35433565 (-)
G66228 NA non-coding downstream 265574 35429184 ~ 35429394 (-)
G66181 NA non-coding downstream 442299 35252402 ~ 35252669 (-)
G66154 NA non-coding downstream 559405 35134978 ~ 35135563 (-)
G66284 NA non-coding upstream 5794 35702763 ~ 35703073 (-)
G66327 NA non-coding upstream 74515 35771484 ~ 35771686 (-)
G66416 NA non-coding upstream 229569 35926538 ~ 35937258 (-)
G66499 NA non-coding upstream 538803 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 1050546 36747515 ~ 36747743 (-)
G66279 NA other downstream 2508 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 345469 35344706 ~ 35349499 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 524789 35149568 ~ 35170179 (-)
G66054 NA other downstream 829663 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 853645 34838761 ~ 34841323 (-)
AMCG00020887 tmem127 other upstream 116904 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 278795 35975764 ~ 35986712 (-)
AMCG00020911 NA other upstream 564024 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 1323042 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 1364626 37061595 ~ 37067805 (-)

Expression


Co-expression Network