AMCG00020881


Basic Information

Item Value
gene id AMCG00020881
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35637050 ~ 35658112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020881
ATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGGATTACCCTCGCTCATGTGGACCTTAACGACAATGTGAGGGCCTCGGACCGGCTGGCGTTCATCAAGCGGCCATCTCGGGACACCCGCTCGGCCGTGCGCTCAGCCGAGTACATGGAGAACGCCCTGCGGCTCATTCACGACAGGGTGCACCGCATCCACAAGCGCTCACTCAACGCCACAGATCTGCTGTCTGAAGAAGACCTGAAGACTGTGGAAAGGCTGACCGGCTGTGCGGCCAGAGTTCATCCCCCCTCCTGCCTCACCACTCCCCTGGTCAACGAGTACAGGACCATCACCAACGTCTGCAACAACAAGAAAAACACACGCCTCGGCGCTTCAAACACCCCATTCGCCCGCTGGCTGCCCTCGGAATATGATGACGGGATTTTTACTCCTAAAGGATGGGACCCTTCCAAACACTATAATGGGTTTCCCCTTCCCCTGGTCCGAGAAGTCTCCAATAAGATTCTGAGCACTCACAACCAGGATGTGGAGAGCGACACCACCTACACCCACTTCCTGACCATCTTCGGCCAATGGACTGACCACGACCTGACCATCACTCCCATTTCCCCCAGCATTCGCTCCTTTAACAACGGGATCGACTGTGACAAGAGCTGCGAGCAAGCCAGCCCATGCTTCCCCATTAGGGTACTGTACAAGGCGTCCTCCTGCGGCACGGGTGACAACGGGTACATGTTTGGTGGTCCCAACGTCCGGCAGCAGATCAATGCCCTCACTGCCTTCATTGATGTGGGCCAGGTGTACGGTCAAGAAGAAAGCCTGGCCCTGTCTCTGCGCAACCTGACCAACGACCTGGGGCTGCTGGCCATCAATCAGAACTTCTCAGATAATGGGCGGGAGTTCCTCCCCTTCAGCCAAAAGACTGTCAATATGTGCGCCACCCGCAGGAAAATCACCAATAACAACACGCTGACCGAGGTGCCCTGCTTCGTAGCAGGGGACGGGCGGGTGGACGAGAACATCGGTCTGACGGCTTTCCATACACTGTTCATGCGGGAGCACAACCGACTGGCTCGTGGCCTCCAGTCTCTCAACCCCCACTGGAGCGGGGAGAAGATTTACCACGAGGCCCGGAAGATCATGGGGGGATATCACCAGGTCATAATCTACCAGGAGTACCTGCCCCATATCGTGGGCCCAGCCGCCATCACCAAGCTGCTACCCACTTACAGCAGCTATGACGAAAACGTGGACCCCAGCATCGCCAACATCTTTTCCACCGCCGCCTTCCGCTTCGCCCACCTTGCCCTGCAGCCGTTCATGTTCCGGCTGGACGAGAAATACAATGATCACCCCCGCTTCCCCAGCGTCTTGCTGCACACCGCCTTCTTCGCACCCTGGAGGCTGCTGTTCGAAGGTGGCATCGACCCCCTCATCCGGGGGCTCATCGGCCGCCCAGCCAAACTCAACACCCAGGAGCACATGATGCACGACGAGCTGAGAGAGCGTCTCTTCGAGTTCACCAGTCGTCTGGCCCTGGACCTGGGGTCTCTGAACATGCAGCGCGGGAGGGACCACGGCCTGCCTGTTCCAGAAAATCCGGAACGGCGACAGGTAAATCTCGAGGGCAAAGGCGCGTTCTGGTGGGAGAGGAAGGAAGTTTTCACCAGCACGCAGCAGGCCGCCCTCCGTGGTGTCAAGTTAGCCAGGATCATCTGCGACAACACGGGGATCACAGACGTCCCCAGCGACCCCTTCCTATTCAAATCCCTAATCAAGCGGCTGGTGGGGCTGGTGGCCGGGGAAGGCCCCTGGCGGACAGTCGCCGCGGAGCTCCCAGGGGACACCGGCACACGAACCCCCATTGACTCGGCCTGA

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0010310 regulation of hydrogen peroxide metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004601 peroxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020881 True 1875 mRNA 0.59 12 35637050 35658112

Neighbor

gene id symbol gene type direction distance location
AMCG00020877 NA coding downstream 5065 35618624 ~ 35631985 (-)
AMCG00020873 LOC105027009,LOC106585261,LOC106580343 coding downstream 45707 35586821 ~ 35591343 (-)
AMCG00020870 LOC102300863 coding downstream 151625 35446854 ~ 35485425 (-)
AMCG00020871 LOC104941581 coding downstream 192032 35440029 ~ 35445018 (-)
AMCG00020865 NA coding downstream 264794 35361459 ~ 35372256 (-)
AMCG00020882 NA coding upstream 13418 35671530 ~ 35675900 (-)
AMCG00020879 NA coding upstream 21321 35679433 ~ 35690340 (-)
AMCG00020878 usp39,LOC106585262,LOC106580344 coding upstream 81933 35740045 ~ 35746487 (-)
AMCG00020880 mat2a,LOC102784064,LOC101478089,LOC105026123,LOC106580346 coding upstream 101739 35759851 ~ 35765430 (-)
AMCG00020886 NA coding upstream 120931 35779043 ~ 35790548 (-)
G66259 NA non-coding downstream 134738 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 203485 35433278 ~ 35433565 (-)
G66228 NA non-coding downstream 207656 35429184 ~ 35429394 (-)
G66181 NA non-coding downstream 384381 35252402 ~ 35252669 (-)
G66154 NA non-coding downstream 501487 35134978 ~ 35135563 (-)
G66284 NA non-coding upstream 44651 35702763 ~ 35703073 (-)
G66327 NA non-coding upstream 113372 35771484 ~ 35771686 (-)
G66416 NA non-coding upstream 268426 35926538 ~ 35937258 (-)
G66499 NA non-coding upstream 577660 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 1089403 36747515 ~ 36747743 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 287551 35344706 ~ 35349499 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 466871 35149568 ~ 35170179 (-)
G66054 NA other downstream 771745 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 795727 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 822756 34808604 ~ 34814294 (-)
AMCG00020876 NA other upstream 36856 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 155761 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 317652 35975764 ~ 35986712 (-)
AMCG00020911 NA other upstream 602881 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 1361899 37020011 ~ 37045939 (-)

Expression


Co-expression Network