AMCG00020886


Basic Information

Item Value
gene id AMCG00020886
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35779043 ~ 35790548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020886
TTCCGGCCAACCGTGTGGCTGGGGCAAGTTTTCGGGAGAGTGTTTACGTGTCCGGGCAGACACGGGGGGGCAGGGACAGTGACACGGGGAGAGGATTTCACATGAGCTGGCTGTCCTTCCAAGCAGAGGACACTGACCGAGCACCCGGAGCATGGAGACGGCAGGTCGAGACACCTCTGCAGggGCCCCATATGTCCAGACCTCCCCTAAGAAGAGAAAGGGGGGCGGCCACAGAGGGACCCCAGGCAAAACGACGGCCCCGCCTGAAAGTGCCCCCGGCGAGAGCCGGATGAAGCGCCTGTTTGGGTTCAAGAAGGAGGACTTGTCTTCCTGGCACAGGCTGGTCTGCCTGCTCAACAGACCCACAGACTCGGCCTCTCTGGGCATGTTCCGGTTCCTGTTCGGCCTGCTGATGGTGGTGGATATCCCCCAGGAGAGAGGCCTCAGTTACCTGGATTACAAATACCTGGACGGGGCTGAGGTGTGCCGCTTCCCTCTCTTCAACTTCCTGAAGCCCTTGCCCATGGACTGGATGTACCTGGTCTATGTCATAATTACCTACTGGTACGTCTTCTTCCTGGACAAGACAGCCTGGAATAACCACTCCTACCTGTACGGCCTCATCGGCGTCCAGCTCACCCTCATGGACGCCAATCGATACTGGTCTATCGACGGGCTGAGGAACCCCAAGAAGAGGAACGCCCATGTGCCCCTGTGGAACTACActctgctcaggggccagATTTTTATCGTGTACTTCATTGCCGGGATCAAGAAGCTGGATTCTGATTGGATAGGAGGATATTCCATGGGTTACCTGGCAAACCATTGGCTGTTCAACCCCTTCAAGATGGTGATGTCAGAAGAGATGACCAGTCTGCTGGTGGTCCATGGGGGCGGCCTGATCCTGGACCTGACGGCCGGATACCTGCTCTTCTTTGATGCCACACGGCCCACTGCCATCGTCTTCGTCAGCTACTTCCACTGCATGAACTCCCAGCTGTTCAGCATCGGGATGTTTTCCTACACCATGCTGGCCACCTCCCCGCTGTTCTGCTACCCTGACTGGCCCCGCCGCTTCTTCGGCCACTTCCCGGCATTCCTGAGAGCCGTCCTGCCTCCCGTGGAGCCGCCCCCCCAGCCCAGCGCCTCCTGTGTATACCCAAAACCCCCCGCAGCCTCCCCCACCATGCCCACCAAGCCCAGCCGGCGCCACCGGCTGGCCGCTGTCTTCGCCCTGCTGTACCTGGCTGAGCAATTCTTCCTGCCGTACTCGCACTTCATCACGAAGATCACGTACCGCGACGGCAAGACCGGCGAAGTGGGCTACCTCAACCCTGGGGTGTTCACCCAGAGCCGGCGCTGGAAGGACCATGGCGACATGCTGAAGCAATACGCCACCTGCCTGAACGAGCGCCTGGAGCACTACAACATCTCCCAGGCCGAGATCTACTTCGACATCTGGGTATCCATCAATGAGCGCTTCCAGCAGAgGATCTTTGACCCCCGCGTGGACATCGTGAAGGCCGACTGGTCGCCGTTTCGCCCCAACCCCTGGCTCATGCCCCTGCTGGTCGACCTCTCGCCCTGGCGGACCAAGTTCCTGGACATCGAGAACACCCTGGACAACCAGACCGAGGTGGTCTTCATTGCCGACTTCCCAGGGCTACACCTGGAGAACTTTGTGAGTGAGGACCTGGGGAACACCAGTGTGCAGctGCCGGCGGGGCAGTACCACAGGGTGCACACGGTGTCTTCGGAGCCCTCCTGCTACATGTACATCTACGTGAACACGACCGAGGCGGTGCTGCTGCAGAACCTCACCCGGCTGTACGAGCTGCAGGAGAGAGTGCGCAACGGCACTGAGACGGAGCCCCTGCCCCCCGAGCTGCTGCCCATCCTGAATGGGACGGGGGAGGAGGTGAACGTGACGGACCCGGTGCTGCGGACCTTCCTACGGCAACAGCAGCGCAGGGAGGAGATGCAAAGGAGACGCAACGCTACGGTGACCGAGAAGGTCACGCGCTTCGCCCAGAAGAAATACTACCTCCTCCGGCGCAGCTTCCTGATGACATCCATCGCTCTGCGGAACCTGGTGCTGGGCCTCCCCCCTGTGGAGCAGCTGGCGCAAGAGGTGGCCTATGCCAACATGAAGGACCCAGGGAGGACCGAAGCCACAGAGACCCGCCAGGACGAGAACGTGAAGGACGAGGTCGGCCACGGGGAGCTGTGA

Function

GO: NA

KEGG:

id description
K10106 GGCX; vitamin K-dependent gamma-carboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020886 True 2233 mRNA 0.61 15 35779043 35790548

Neighbor

gene id symbol gene type direction distance location
AMCG00020880 mat2a,LOC102784064,LOC101478089,LOC105026123,LOC106580346 coding downstream 13613 35759851 ~ 35765430 (-)
AMCG00020878 usp39,LOC106585262,LOC106580344 coding downstream 32556 35740045 ~ 35746487 (-)
AMCG00020879 NA coding downstream 88703 35679433 ~ 35690340 (-)
AMCG00020882 NA coding downstream 103143 35671530 ~ 35675900 (-)
AMCG00020881 NA coding downstream 120931 35637050 ~ 35658112 (-)
AMCG00020889 NA coding upstream 10737 35801285 ~ 35810870 (-)
AMCG00020885 snrnp200,LOC106585548,LOC106579886 coding upstream 36734 35827282 ~ 35847057 (-)
AMCG00020888 NA coding upstream 73586 35864134 ~ 35880088 (-)
AMCG00020897 ykt6,LOC108441080,LOC107733284,LOC107751647,LOC107602234,LOC106580580 coding upstream 201849 35992397 ~ 36000532 (-)
AMCG00020899 NA coding upstream 215416 36005964 ~ 36010739 (-)
G66327 NA non-coding downstream 7357 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 75970 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 276731 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 345478 35433278 ~ 35433565 (-)
G66228 NA non-coding downstream 349649 35429184 ~ 35429394 (-)
G66416 NA non-coding upstream 135990 35926538 ~ 35937258 (-)
G66499 NA non-coding upstream 445224 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 956967 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 1060522 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 1078869 36869417 ~ 36870155 (-)
AMCG00020876 NA other downstream 82074 35694968 ~ 35696969 (-)
G66279 NA other downstream 86583 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 429544 35344706 ~ 35349499 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other downstream 608864 35149568 ~ 35170179 (-)
G66054 NA other downstream 913738 34862619 ~ 34865305 (-)
AMCG00020887 tmem127 other upstream 23325 35813873 ~ 35819830 (-)
AMCG00020900 NA other upstream 185216 35975764 ~ 35986712 (-)
AMCG00020911 NA other upstream 470445 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 1229463 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 1271047 37061595 ~ 37067805 (-)

Expression


Co-expression Network