AMCG00020890


Basic Information

Item Value
gene id AMCG00020890
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35958629 ~ 35986692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020890
CTGGCAGAGCACAGCAGGCAGTTCATCAACACGGTGTGGGGATGGGGGTGAGTGGGTGCTAAAACGGCCCTGTGGTCAATGAGTATTGAGGAAACCCCAAGGGAGTTTCCTCTTGTGCCTTGTGAAGAGGCCTGTGTCTACTTGCCACCTACAGGGCTTGACAATGTGCCAGAGCACAGCCGTTTGTTAATCATCAATGGTATGCAGCAGGCACCAAGGACGAGGATTGGTGCTTCAGCGTCAGGCCAGATAAAGAAGAAGCAGCATCAGTAAAACTGCTGCCGACGTCAAGGAGAAAAACAGTTCCCACCCTTTACTGCTCCTCTGTCACACAATCAGCCGGACGGACGCACCAGAGGGTCCCACTTTCCACCTTGCCACCCTCTCTCCGAGCTCCACAGCGTCTACTGACCGCCGAgacctccaccccccacccccctcgtCGCTCTCCTCTCTATCCCTCGGGGACAGCAGCCTTGGAATACCCATACGAAGGCTTCTGCGATGGACAATCCGTTGGTGGCCACCTTGTGCCTCCTCTGGGTGTGCGCGGCTGGCATGGAAGGGCTCCATCAAGAGGGGCAATGCATGTTCTACGGGGAGTGTGGCTTCAATCCTGAGGTGACCAATCCCCTGATCAATTCAAAGATCCCCTGTGCCTACCAAGGCCCGGCTAAACCCCTGAACAGTATTGACTATGCCCAGCTAATGAAGGTGTGCCCTATGCTGGACAGGGGGCCAAAAGACACAAGAGTCTGCTGCACCAGCTCCCAGATGAAGTCCCTGCAGAAAAGCTTCGCCCTGTCCAAAGCCATCCTGAACCGCTGCCCCTCCTGTGCCGACAACTTTGCCCACATCCACTGCATCAACACCTGCAGCGCCAACCAAAGTCAGAGTGTCAACATCCTGCGGACCACCAATTACACAACGGATACGGGCGAGCAGAAGGAGGCTGTGGTGGCGTATGAGTCATACCTGACCCAGGAGTTTGCCAATGCCTCCTTCAACTCCTGCAAGAACGTGCGCCTTCCTGCCACTGGGGGCTATGCCATCGGGGTCATGTGCGGCAAGTATGGGGCAGCTGGCTGCACCACACAGTACTGGCTGGACTTCCAAGGCGATGCCAGCAACGGCTTGGCCCCCCTAGACATTGATTTTCGCCTCATGCCTGACGGCAGGCCTGTCCCTCCTGGGATTGTTCCCTACAATGGGCGGGCCTGGCATTGCTACGAGTCCCCATCCCTGGATGGACAGGCCTGCTCCTGCCAGGACTGTTTAGAGGCCTGCCCCGTCATTGTTCCCCCCACCTCTGCATCCGAGTCTTTCAAAATTGGCAGGCTGGATGGCGTGCTGGTGGTGTGTCTCGCCATCTTCGCTGGGGCCAGTCTCTCCTTCTTGGGCTTCCTGCTGGTCAGGAACTTACACCATGGCAAGAGCAAGGAACCGGGGAAAGACAAAAACGGCAACGAGGTGAGGAAAAAGGTGCTCCCTAAAGATGTGACGTGCACCGACAGAAACAGCCTGGCCACTCAGGCGTTCCTCGGCTCTCTCTTCCAACGGTGGGGCACGCTGATGGCCAGCCACCCGATCAAGGTTATTCTTATATCCCTGGCCGTGGTTGTGGTGTTTGCCATAGGCCTCATGCACATCGAGCTGACCACAGACCCTGTCCAGCTGTGGTCGGCTCCTAACAGCCAGGCCATGAAGGAGAAAGATTTCCATGACGCGCACTTTGACCCTTTCTTCCGCACCAATCAGCTCATCCTCACAGCCCCCGGGCGCAAAGGCTATACCTACAATTCACTGGTCTATGGGACAGTGACCTTCGGGGGGGTGATTGCCAAGGACCTCATCCTGCAGCTCCTGGAGTTACAGAGTCGCCTGCAGACCATCCAGTTTTGGTCAGAAGAACTCGGTCGCAATGCCAGCCTCAGCGATATCTGCTTTGCTCCACTGAACCCCAACAACTCGTCGCTCACCGACTGCGCTGTCAACAGCTTGGTGCAGTACTTCCAGAACAACGTGACAAAACTGAACGCTAAAGTCAATATGACTGAGGGTGGGCAAACTAAGGAGGTGGACTGGAGGGATCACTTTATATATTGCGTTAACTCTCCGATGTCATTCCAAGACACCACGGACCTGGCGCTCAGCTGCATGGCAGACTATGGGGCTCCAGTGTTCCCCTTCCTGGCAGTGGGAGGATATGAGAACGAGACCTACACCGATGCGGAGGCTCTGATTATGACCTTCTCCCTGAACAACTACCCGCGCGACAGCCTCAAGTTCAAGCTAGTCCAGATCTGGGAGCAGAAGTTCTTGGACATCATTCAGGAGTACCAGAGGGACCCCTCCACCAATTTCACATTCGCCTACATGGCAGAGAGATCCCTGGAGGATGAAATCAACCGCACAACAGCTGAGGACATCCCCATCTTCATGATCAGTTATGCAGTGATCTTCATGTACATCGCAGTTGCCCTGGGGGAGTACTCCTCCTGGAAGCGTATACTGGTGGACTCCAAGTTTTTGCTGGGATTTGGTGGAATCCTGGTAGTGGGCTGCTCCGTCCTGGCCTCCATGGGCTTCTATGCCTGGGTGGGCATCCCCTCCTCACTGGTCATCCTGCAGGTTGTGCCCTTCTTAGTGCTTGCTGTGGGAGCTGACAACATCTTCATCTTCGTCCTGGAGTTCCAGAGGGATGAGAGAAGGccaggagagaagagagaggaacATATCGGCCGCATCTTGGGAAACGTGGCTCCCAGCATGCTCCTCTGCAGTGCCTCTGAGTGCGTCTGCTTCTTCTTAGGGGCTCTGAGCAGCATGCCGGCTGTGAAGTCCTTCGCCCTGTATGCGGCTCTAGCGGTGCTTATGGACTTCCTGCTGCAGATGTCGGCCTTTGTGGCGCTGCTGTCTCTGGACGCCCGGCGGCAGGACGCCTCTCGCTGCGAGATCCTGTGCTGCGTGACCGTGTCCAGCAGGCCCAAAAAGACCAGGAACGAGGGCTTCCTGCTGCCCGCCATGAGACGATACTACGCCCCCTTCCTACTGCACGGGGTCACCAGGATCACTGTGATGGTTCTCTTCTTCTTCATGTTCTGTTCCAGCATCTTCCTGATGTTCCATGTGACGGTGGGCCTGGATCAGGAGCTGGCCCTGCCCCAGGACTCCTATATGCTGGAGTATTTCAAGTACCTATACAAGTATTTCGAGGTGGGCGTCCCAACTTACTTTGTCACCACGCGGGGCTACAACTTCACGACAGTGAAAGGAATTAATGATGTCTGTTCCAGCGTGGGCTGTGACCCCTTCTCCCTCACCCAAAAGATCCAATATGCCACTGACTTCCCCAAAGAGTCATACCTGGCTATCCCAGCCTCGTCCTGGGTCGATGACTTCCTTGACTGGCTCAATCCCGGCTCTGGCTGCTGCCGGCTGTACACCTCTGGACCTAATATAGGGAAGTTCTGCTCCTCGAATGAATCTGACTGGCGTTGCTTGCTAAAATGCATGCCACTGCCTCTGAACGGCATCCTGAGACCCGATGTGAAGCAGTTCAACACCTTCCTGCCCCACTTCCTCTCCGATCGGCCCAACCTGAAGTGTGCAAAAGGGGGCTTGGGGGCATATGATAAGGCTGTGGTGATGAATGAAGCAGGGGAGATTACAGCCTCGCGGTTCATGGCCTACCACACCCCGCTGACCAACTCCCAGGAGTTCACGGCCGCCCTGCGCACAGCCCGTGAGCTGGCAGCCAACATCACCAAGGGCATGAGGGAGATCCCCGGCACTGCGCCCGACTTTGAGGTCTTCCCATACACGATAACCTATGTGTTCTACGAGCAGTACCTGTCCATCGTTCCCGAAGGCATTTTCAACATCTCTATGTGCCTGCTGCCTACCTTTGTGGTGTGCTGCATCCTCCTGGGCATGGACCTGCGCTCTGGCCTGCTCAACCTCCTCACCATCATCATGATTACCGTGGACACCGTGGGGGTCATGACCTTGTGGGGCATCGATTACAATGCCGTCTCGCTGATCAACCTGGTCACAGCTGTGGGAATCTCGGTGGAGTTTGTCTCTCACCTCACACGCTCCTTTGCCATCAGCACCAAGCTCACCCGTGTGGAGAGGGCTAAGGAGGCCACCACCAACATGGGCAGTGCGGTGTTTGCGGGCGTTGCCATGACAAACCTCCCAGGGATCGTGGTACTGGCGTTTGCGAAGGCCCAGCTCATCCAGATCTTCTTCTTTCGCCTCAACCTGGTCATCACGCTGCTGGGCATGGCGCATGGTCTGATCTTCTTGCCCGTGCTGCTGAGCTACTTCGGGCCGGATGTGAACCGGGCCGTGCTGCTCGAACTGCAGAAGAAAGAGGCCCAGGACTCGGACCCCAGCGATAAGAACTGCTACTCAAACTCGACCTTTGAGAACGCAGAAGAGAAGGGCCCCATCCATGACAACCACTCGCTAAGCAATGGgcagccagacacacacaccacacagacTGATGGAGAGCCTGGGACAGCCACCACCAACTTGTAAATGATCTGCAAAGGACACCCATTTAACCCACAATACCTCCATCGTTCATGGTCGAAACTCGGGACTGACGAGCGGTGAAACACCCTGGAGAGCTGCACTGTAACGGTCAATTGAGGCACTTCAAGACAAggagattaatatatatatattttaggcaAACACTAAACAAAGGCAATTGTAATTGAGTGGGATCTCTGTGGTTGTTGAATGTATTGCACTCCACTCATTGCAGTTCCTGACAAAGGCCAAACACAGTTACCATCTCTGATCAGTGCCAGCACCAAGGGACCAGCATCTGTTCTGAAAATGACTGAACTCCTCCTCCAATGCCAGTATTCATGAAATCTATTGTATATCCATAAATATAGAGAAGCTGTTTAACATTAATTCATGTAATTTCAAGTTCTTCAGAACCATAATGACACAAGTAGAACATTAagagttgtgtttattttattaaagtgtgGAGTGTTGCATCACTAAGGGCCTGGTTCAACACATGCCTTTGATACAGTACATACAGGATTACAGGTGCATGCTGGGCCAATGGGCAGATTCCACACAGCCATGGTCCTTGGCCGTGGGTCAAGGCAGCCCAGCTCTTAATCAGGACTGACCCATTCACGCAGTAGGTTAACCCATTACTCAGGTCAACAGGAGCTTCTGCTTTGGCCAGACCAATACAAACCTGCTGAATGGTGGCTCTCACACAGCAGCAATACATATAGATATCTATAGAAGCTTATGCAGGCTTCAACATCATGAGAAAAAGCAGAGCAAGGAGATTGATGGGACTGAAAAAATGTTGCTTATTATGGAAGCAGAGAGGAAATCTGGGGATGGTATCTATCCTGTTGCGAGCCAGTGTTTTGACAGCTCAAACTTTTGAGACAAGTCTTTCAGAAACACTACTGCAGCTAAGTGCCCACCCCCAccataaagtaaatacaaattgaagtattctaaacaaaaacaaaaaacaatttttaaTCTGTGAGATCACAACTTTGCATAATAAGGTGTATAAACAGTGTCAAAATAATACCCTGGAACAGTGGCATGCAAATACTGTACAAAGACAGCCTGCTTAGTCATGACAGTCCTCCCCTCCAAATCATGTAGCAATATAAACCAAGCAATGGGTTTATTAGAGGATGAAAATGTAGAACTTTAGTCAATATTAGTAGACTTACATTAACTTAATTATGGaaagttatatttttgtagCCATGCAGAATGTGACAGTGTATACATCCCCACTGCATGCACAACTTTACCCCTCAATACACGTAGATGCGTGTGCAGAACCACACCGAGCAAAAGAAACCAACAGTTTCATGAACTTAAACTTGGGTTAAGCAggcacaacatttaaaaatgtcaaaagaaCAAGCCTTCTAAAGAAGTGGGGGAACCAGCAGAACCAGCCATAATTTTTGCACAGCATAAACAACGCCCAACTTCCACCCAAATTACATTAACTGACTCTGGAGAAAGTCAGGATCAGAACTTACACTTGACTGGAGAGTTCCTAAAACAAAGCTCTCTTAGCATGGACTTCAAGTGGATCCCTGGCACAAAGTCTTGCCTGCACTCTCTGAAAAGGTTCTGTGCCGGTCAATTATAGATTCACTGCGGCACCACTGCCCTTTAAGCAGTGGTCTCGTTAATCAAGTCAACTGTTTTAGACTGGGAAGAGGTCTGTTCACAGCACCTCCCTCAGGTCGATGAGCACAAGGTTAAGAGCAGCAGCGGTTTGCAAAATGTAAGGGAAGCACATGAAACCTTTGCTGGATCAAATAAATTAGAGAACCCTCTAAAGCCATCACCCTTAATGCTGGTCCAGCCTTCTTGACAGCCAAGTTGTCTATGTGAAATGCAGCATAACCCCACACCCCAGTGGTCATCCTTCTTCTGGTCAGTGTGGGCCCCACAGTCCATTCCAAGAGAAGCCAGGCCACAGCTGGAGCCCAGGGTCACTGCCAGTAGCAGAACTGCTCCCTTAATTGAGCAGCCACAGCAGGGCTACCAGGTAACACTGTCTGAGGGGCAGCAAGGGGCCCATGAGTGGTGCGAGGCATGACATACCACAGACAAGAGTACGGAAAGCTGGCACCCATCCCCCcgccaccccaccccaccctcagGTCAGCACTTCTCCCACTGCCAGTGGGTCAGCAGATCAGCTCCTTCACAGGGGCCTTCTTCTCACGAGCCTTCatgattttcttctttttcttctgctgctgccGCTCTTTTCTCAGGGGCGCCGAGACCATGCACTTCCACAGCACCGTGTACAGAGCAAGCAGGAAGGTGATGAACAACGCCGCTGCGATGGCACCAGGAATGATGCCGCTCCCGGGTGCCTGGCTGTCCTTGTCTGCGGGGAGGCCTGTGAGGGCGGGGCGCGGGGGGACCGTGGACCCATTTCTGTGCCCCCTAGGAAGGGCTGTCCATGGTTGGTGCTGGGGCTCCCCCTGTGTCAGGTTCACCTCGTCCCCGGAGCGCGTCCTGTTCGGGGAGTCTGTCGGCATTGTCGCGACTGGAGCCGGTCTCTACCTGTGCGGGACAGCCGAAGTCGCTTGCTCATCCCTGGGCGGGTTGGGGACACCCCTGCTGTTAACCAATATCCGACAACGGCGTTCCCGAAAAATCAACACcttgcagaaaaacacacaaccccCCAACGCGC

Function

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020890 True 7243 mRNA 0.53 22 35958629 35986692

Neighbor

gene id symbol gene type direction distance location
AMCG00020892 ddx56,LOC107751685 coding upstream 8454 35937442 ~ 35950175 (+)
AMCG00020893 tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141 coding upstream 21479 35930622 ~ 35937150 (+)
AMCG00020891 NA coding upstream 32135 35909352 ~ 35926494 (+)
AMCG00020884 NA coding upstream 98934 35851639 ~ 35859695 (+)
AMCG00020883 LOC106579887,LOC106585549 coding upstream 131556 35820156 ~ 35827073 (+)
AMCG00020895 gck,gk,LOC106580581,LOC106585167 coding downstream 34945 36021637 ~ 36029074 (+)
AMCG00020896 myl7,LOC107753162,LOC107703146,LOC107657323 coding downstream 43641 36030333 ~ 36033302 (+)
AMCG00020894 NA coding downstream 48179 36034871 ~ 36043978 (+)
AMCG00020902 ash2l coding downstream 114905 36101597 ~ 36114326 (+)
AMCG00020901 bag4,LOC107702866,LOC107571962,LOC103396927 coding downstream 192233 36178925 ~ 36184018 (+)
G66342 NA non-coding upstream 101601 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding upstream 140850 35813743 ~ 35817779 (+)
G66325 NA non-coding upstream 190058 35768241 ~ 35768571 (+)
G66319 NA non-coding upstream 197597 35758108 ~ 35761032 (+)
G66290 NA non-coding upstream 242380 35716045 ~ 35716249 (+)
G66395 NA non-coding downstream 17927 36004619 ~ 36074421 (+)
G66524 NA non-coding downstream 738202 36724894 ~ 36725129 (+)
G66528 NA non-coding downstream 819628 36806320 ~ 36806577 (+)
G66602 NA non-coding downstream 1086987 37073679 ~ 37074634 (+)
G66696 NA non-coding downstream 1301822 37288514 ~ 37288841 (+)
G66362 NA other upstream 50227 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 208183 35747156 ~ 35750446 (+)
G66149 NA other upstream 793644 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 809211 35147603 ~ 35149418 (+)
G66060 NA other upstream 950307 34967844 ~ 35008322 (+)
G66506 NA other downstream 268007 36254699 ~ 36256511 (+)
G66551 NA other downstream 928123 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1580344 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2130370 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 4334421 40321113 ~ 40321821 (+)

Expression


Co-expression Network