AMCG00020892 (ddx56,LOC107751685)


Basic Information

Item Value
gene id AMCG00020892
gene name ddx56,LOC107751685
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35937442 ~ 35950175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020892
GTCCTCCTGGCCACGGGGGGCGCTGCTGCCTCTCGCGGTTGTATCCCGGCAGCCCTTTCACCCCCTGCTCTCCAGTCGCGCACACGTGGAAGCAATGGCTGCTGACAGACTGCAGTTCCATGAGATGGGCTTAGATGATCGCCTGTTAAAGGCACTGGCCGACCTGGGCTGGGCTCAGCCCACTCTGATCCAGGAGAAGGCCATCCCTCTGGCTCTGGACGGGAAGGACCTGCTCGCCCGGGCCAGGACCGGATCCGGGAAGACAGCCGCCTACGCCTTGCCAATCATCCAGCACATCCTCACGGCCAAGCAGacCGTGCAGGAGCAGGCTGTGCGTGCTCTGGTCCTCGTGCCCACCAAGGAGCTGGGGCAGCAGGTGCAGACAATGATCCGCCAGCTCACCGGCTTCTGTGCCCGGGACGTGCGCGTGGCAGACATCTCGGGCAAAGCGGAGCTCTCGGCACAGAGgcCCATCCTGATGGAGAAGCCAGACATCGTGGTGGGCACACCGTCGCGGGTGCTGGCCCACCTGACGGCACAGAACCTGATGCTGCGCAGCTCGCTGGACATGCTGGTCATCGACGAGGCCGACCTGCTCTTCTCCTTCGGCTTCGAGAGCGACCTCAAAGGCCTGCTGTGCCACTTGCCCAAGATCTACCAGGCCTTCCTGATGTCAGCCACGTTCAACGAGGACGTGCAGGCCCTGAAGGAGCTGGTGCTGCACAACCCTGTGACCCTGAAGCTGCAGGGCTCCCAGCTGCCCGACAGCTCCCAGCTCAAGCAGTACAGCGTGCTGTGTGAGGAGGAAGACAAGTTCCTGCTGATCTACACGCTGCTGAAGCTGGGCCTGGTCCGCGGCAAGACCCTGCTGTTCGTCAGCGCCATTGACCGCTGCTACCGCCTCAAGCTCTTCCTGGAGCAGTTCAGCATCCCGGCCTGCGTGCTCAACTCCGAGCTGCCGGTCCACTCCAGGTGCCACATCATTGGCCAGTTCAACCAGGGCTTCTATGATTACATCATCGCTACCGACGAGCAGAGCCTGGCCGACCCTGGCAGTGCGCAGGAGGGAGAGGGCAGCCAAGGCaccaagaagaagaacaagggcTCAGGGAAAGGAGGGAGGGGAAAAGACAAGGAGTACGGTGTCTCCCGGGGCATCGACTTCCAGAACGTGGCCAACGTCATCAACTTCGACTTCCCGGCCGACATCGAGTCCTACATCCACCGAGTTGGCAGgacTGCTCGAGCCGATAACCCCGGCACTGCACTGACCTTCGTGTCGCACACAGAGCTGCCCCAGCTGACCGAGATCAAGGACGCCCTCACTGGAGACAGCGCCGACTGTGCCCTGCAGCCGTACGGGTTTAAGATGGAGGAGATCGAGGGCTTCAGGTACAGGTGTCGGGATGCCATGCGGTCCGTTACCAAGCAGGCCGTGAAGGAAGCCCGGCTGAAGGAAATCAAACACGAGCTGCTCAACTCTGAGAAGCTGAAGACGTACTTTGAAGACAATCCCCGGGACCTGCAGCTGCTGCGCCACGACCGCGACCTGCACCCTGCCATCATCAAACCGCACCTGAAGAATGTGCCAGAGTACCTCATCCCTGCTACTCTGAGAGGGGTGGCCAATCCCATTATCAGCCGGAAGAAGAAGCGGCGCCGTGCGGTGGCTGGAGCCCAGGAAGGGGGCAGAGCTTTGATCAAGGGTTTTAAACGTCACACGAGAAGCAGCAACCCACTGAAGAACTTCCGCTACTCTGGGAAGCAGGGCAAAGGAAGAGGCGGCCAGAGGACCCAGTCTTAAGAGGCTGACGGGACTGCGGATCGCTTCAGATGCCCAGAAGGACACCGGTCCACCGATCACATTTTGTTCTGATAGGACTGAGCGGAGCTCCTGCGTCTCTGGTCTCGAGGAGGGGCACGGGACCCAAAGACAAGACCAGCTTTGCATGCAGGGGACCCCGCTGCCTTCACACAAACCCGCTGCCTGGCATTCATTAGACCGCTTGTGTCTCTGGCGCTCTGTGGACACTATTGGGGGAAATTTGAGACGTGACACATCCATGTTTAATGCCCGCTGATGAACTCCAATTAGCCGGCAGCTGGAAGTCCCGTTGTTCACGAGAGCCCGTCTTCAGCTCCATCCTGGTCATTTgttctgtgttattttttttccctcactttctaaaataacaaaagactCTTTTCTATTACTATAATGCTTTTGTCACCCCAGACTTAAGCTTTTGTCACTTTAGCCACTGACACTTAGAGTGTGACCCTGAAACCTGCCATCTCTAATGTGTCCACTAGGCGGAGACAGCGGCCATTTAAGAATAGACAGTTGCTGTTGTCAGAAACACCCTGATCATAGATGGTCAGGTTGACATGTTAGCTTTTGCTGGAGATAATAGTATCTTACTGTACGTCATTTaggatacaatttaaattattaattgtggGAGCTACAGCGTTTATGAATCCTCAGATTAAATGTCTTTGCTCTGCCAGATTACCCTTGGCGTGTTGTAGAATTGTGTTCGGATCTGACTGGATATGGGTCCAGCAGGTTGCCGGATAATTCccacagtattcctaccacttGCCCCTTGAAGGTAGTTGATCGGGATTCCAGTTCAGAGTTCAAATTGTGACTGGATTTAGTTTTGACTGATTAGATGCCACTTTtatgccttttttaaatgtgtaaaggacttgacattattatataaacacaatgtttttaattactgctGAAGCATTCCCTTGACTAACTGCAcagaactgtataaaaacaacacagctgcACATAGGCCAAACAAGAACAAGATAAACTTTTTTGGTAGATGAGAGTGTAGGCATCACAGCCAAAGGTCCTGACAGACTTACCTAACACTGTGTCACTGAGGTTAATGTGTCGACTGCAGCCTCTGCACTCTCATCTTGCTTTACTGCAAAGATAAACTGGTGTGTGAAGACCAGTGTGACAAAAGATaggttataaaaaataataatgtgtgtgtgtatgtatgtatatatatatatatatgtatatatatatagcaggtCTTTTAAAGGTAAAGTATGGAGAGCGTCGGCTAACAGACAGGAACTGGAGGTGGTTAGAGTAAGACAAATAAGATTGCCATGTTGGGTAAAATGTCTCTGTGGATCCCCGAATGGTAGTACATCCCTAATCCAGCAGATTTTGAACATAATCGCTTGCCTTTGGAAGTCTCTCTGTGTTGAAGGTCCACCTCAGAAAccagatttaataaaacaaaaaaaagtaaatgtacgCATCCACAGTGTGGTTTATGATTAGTAGCTAATGCTATTTAGAAATCCCAGAAGCAGAGGGACAGAGATGAAGTGGAGA

Function

symbol description
ddx56 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX56

GO: NA

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020892 True 3379 mRNA 0.53 14 35937442 35950175

Neighbor

gene id symbol gene type direction distance location
AMCG00020893 tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141 coding upstream 292 35930622 ~ 35937150 (+)
AMCG00020891 NA coding upstream 10948 35909352 ~ 35926494 (+)
AMCG00020884 NA coding upstream 77747 35851639 ~ 35859695 (+)
AMCG00020883 LOC106579887,LOC106585549 coding upstream 110369 35820156 ~ 35827073 (+)
AMCG00020875 NA coding upstream 200453 35727752 ~ 35736989 (+)
AMCG00020890 NA coding downstream 8454 35958629 ~ 35986692 (+)
AMCG00020895 gck,gk,LOC106580581,LOC106585167 coding downstream 71462 36021637 ~ 36029074 (+)
AMCG00020896 myl7,LOC107753162,LOC107703146,LOC107657323 coding downstream 80158 36030333 ~ 36033302 (+)
AMCG00020894 NA coding downstream 84696 36034871 ~ 36043978 (+)
AMCG00020902 ash2l coding downstream 151422 36101597 ~ 36114326 (+)
G66342 NA non-coding upstream 80414 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding upstream 119663 35813743 ~ 35817779 (+)
G66325 NA non-coding upstream 168871 35768241 ~ 35768571 (+)
G66319 NA non-coding upstream 176410 35758108 ~ 35761032 (+)
G66290 NA non-coding upstream 221193 35716045 ~ 35716249 (+)
G66395 NA non-coding downstream 54444 36004619 ~ 36074421 (+)
G66524 NA non-coding downstream 774719 36724894 ~ 36725129 (+)
G66528 NA non-coding downstream 856145 36806320 ~ 36806577 (+)
G66602 NA non-coding downstream 1123504 37073679 ~ 37074634 (+)
G66696 NA non-coding downstream 1338339 37288514 ~ 37288841 (+)
G66362 NA other upstream 29040 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 186996 35747156 ~ 35750446 (+)
G66149 NA other upstream 772457 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 788024 35147603 ~ 35149418 (+)
G66060 NA other upstream 929120 34967844 ~ 35008322 (+)
G66506 NA other downstream 304524 36254699 ~ 36256511 (+)
G66551 NA other downstream 964640 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1616861 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2166887 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 4370938 40321113 ~ 40321821 (+)

Expression


Co-expression Network