AMCG00020893 (tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141)


Basic Information

Item Value
gene id AMCG00020893
gene name tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35930622 ~ 35937150 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020893
gCTCCATCACTACACAATTGCCAGTTATAGGCCACAGCGACTGTCCACCTCAGTTCAATGCTGCTCTTTTCTGCCGCCGCATCACAAAGAGCGCATGTAACTTTCTGCTAGGCCCCTGAGCACTGCGCAGACTCAGTACCCATTCCCTGGCGGAGACGCCGAGGCGCATGCGCACTCGTCAGTTGGGGCTCCGTGCAGTGCTGGCAGGCGCCGCTGACGTCCGAGAGGCTGCAGCTGTCAATGGCTGTGCTGTGCAGGATGCGTCCTCTCTCGCAGGTGCTCGGCTGTTTCTTGCTCGCCACTTGTCTCAGCCTCACCCGAGCGCTGTACTTCCACATAGGCGAGACGGAGAAGAAATGCTTCATCGAGGAGATCCCCGATGAGACGATGGTTATCGGGAAATACCGCACACAGCTGTGGGACAAACAGAGTGCCTCCTTCCTGCCCTCCACTCCAGGTCTGGGGATGCACGTGGAGGTCAAGGATCCCGACACCAAGATTGTGCTCTCGCGCCAGTACGGCTCCGAAGGCCGCTTCACCTTCACCTCCCACACCCCCGGAGAGCACCAGATCTGCTTGCACTCCAACTCGACCAAGATGTTGCTCTTCGCAGGCGGGAAGCTGGTAAGCATGGCAGCACGCAAAGCCTCTATGGCAGAGGAGAGAGCCGGAGTCACCCCCTTCAATGAGCAAAATGAGAGAGTCCACCTGGATATCCAGGTCGGGGAACACACCAACAACTACCCCGAGATCGCCGCCAAGGACAAGCTGACCGAGCTGCAGCTGAGAGTCCGGCAGCTGCTGGACCAGGTGGAGCAGATCCAGAAGGAGCAGAACTACCAGCGGTACCGCGAGGAGCGCTTCAGGATGACCAGTGAGAGCACTAACCAGCGCGTGCTGTGGTGGTCCATCGCCCAGACCGTCATCCTCATCATCACCGGCATCTGGCAGATGAAGCACCTGAAGAGTTTCTTCGAGGCCAAAAAACTGGTGTAATCGGCGACGCCCCACAAACACACCTCcagcacccctccccctccgTCTTCAAGTCCCCTTCTCCTCGCTCCACACTGGACAGGGCACAGCTGTGACCACGCCCTTTACAAACCCCCAGTTCAGGCTCTCGGGGATGCCTAGAGAtctgaagactttttttttttttttttttacttggggTTTGTGGAGGACGTGTTGTGACCTTTTTCGTTTTTGGTCAGGATCAGGGAAggagaaatacaagaaaaaaagacaagattGAATCTCCCTTTATCTTCCGCCTTTTCAAGGAAGATCCCCTTTGAATACACAAAGATGCTCTTTTTTATACGTAGATGGCAGAATGTAACAAGACCTTTAAAGCAGCCATTTTGAACTGAGTATTCTTTTTATAACCCATCTAACAGAGCTTCTAACTCTGGATGTCCTTTAATCTCTGGGAAGTTCTCATGCTGTATATACTATTAATGTCAGGGTTGTGGCAGGATGCTGGATAGTTGAATTAATCTCTGAACACATTCACAAAGGTAGATGAACTGATGCAAAGGGTTTAATTCAGAATGATTGATAGCTGTTGGAGGAAAAGGTCAAGGTACGTTTTTAGCAGTTCTAACTTATTGTAGCTGTAGTGCTGTCACTGTGTGCGGGGGGCTGGATGTGCGAGAAGGAGTCTCTTTACtgaagaaactaaaatgtaaaatcaaagcATGGGAAGGGTTCTTAAAATGAAGAAGTGGCACATTGCTTGCAAGCTAGACATTCgtttaaattatactttgtttttttaaggtcgGTGGGTTTGGGCTGTAAATGTCGCAGGTTCACAGTATATTTGTAACCACTTTCTGACCAGTTATTGCGTTTATTTCTCTGGTTTCCGTCTGTGTGATTATTTATAATCTGCTGTTTTGCCCGTGACTGTTCTTCTCGCAGGGAGGGAGGCCTGAGCACTTGAACGAGCCGCCCGTCACCCGTCTGAAACTGAGCCCGCCTTGAACACTGCTTTTGTGCTGCTCAGGCAATCAGATATCGCTCTACACACATTCCAGTCCACGCACAGAAGCACAAAAGGCCTTACAAGTGCTTTCTCAGCTCTCCATTATGCTTTTGACTTGACAGGTTATGCCatgtgtagtacagtacaatacagtacattatttaGCCTCATTTTGTGGGCAAATGGAAGAGGAATAATTCCTGTACTTACTCAGCCAGGTGTCTTTCAGTGTCGTGTGCAGTTGTTTAGACCAGAGAGAACGGTCTTGGATTTCTAATTAATTACGGAGAATTCACGTTCAAATATTGAAACCGTTGTGGAAGGATATCGGCCCATGGGAAGAAGCTCCACTTTATCTGCTTATTCCCATTTTTaagaattaataatttatttgtctgtttaattgtggtctttttttttctctctctctt

Function

symbol description
tmed4 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED4 (transmembrane p24 trafficking protein 4).

NR:

description
transmembrane emp24 domain-containing protein 4 precursor

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20346 TMED4_9_11; p24 family protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020893 True 2424 mRNA 0.49 5 35930622 35937150

Neighbor

gene id symbol gene type direction distance location
AMCG00020891 NA coding upstream 4128 35909352 ~ 35926494 (+)
AMCG00020884 NA coding upstream 70927 35851639 ~ 35859695 (+)
AMCG00020883 LOC106579887,LOC106585549 coding upstream 103549 35820156 ~ 35827073 (+)
AMCG00020875 NA coding upstream 193633 35727752 ~ 35736989 (+)
AMCG00020872 NA coding upstream 513777 35416052 ~ 35416845 (+)
AMCG00020892 ddx56,LOC107751685 coding downstream 292 35937442 ~ 35950175 (+)
AMCG00020890 NA coding downstream 21479 35958629 ~ 35986692 (+)
AMCG00020895 gck,gk,LOC106580581,LOC106585167 coding downstream 84487 36021637 ~ 36029074 (+)
AMCG00020896 myl7,LOC107753162,LOC107703146,LOC107657323 coding downstream 93183 36030333 ~ 36033302 (+)
AMCG00020894 NA coding downstream 97721 36034871 ~ 36043978 (+)
G66342 NA non-coding upstream 73594 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding upstream 112843 35813743 ~ 35817779 (+)
G66325 NA non-coding upstream 162051 35768241 ~ 35768571 (+)
G66319 NA non-coding upstream 169590 35758108 ~ 35761032 (+)
G66290 NA non-coding upstream 214373 35716045 ~ 35716249 (+)
G66395 NA non-coding downstream 67469 36004619 ~ 36074421 (+)
G66524 NA non-coding downstream 787744 36724894 ~ 36725129 (+)
G66528 NA non-coding downstream 869170 36806320 ~ 36806577 (+)
G66602 NA non-coding downstream 1136529 37073679 ~ 37074634 (+)
G66696 NA non-coding downstream 1351364 37288514 ~ 37288841 (+)
G66362 NA other upstream 22220 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 180176 35747156 ~ 35750446 (+)
G66149 NA other upstream 765637 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 781204 35147603 ~ 35149418 (+)
G66060 NA other upstream 922300 34967844 ~ 35008322 (+)
G66506 NA other downstream 317549 36254699 ~ 36256511 (+)
G66551 NA other downstream 977665 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1629886 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2179912 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 4383963 40321113 ~ 40321821 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022514 tmed4 coding NC_007134.7 CM002907.2 33977724 ~ 33986762 (-)