AMCG00020897 (ykt6,LOC108441080,LOC107733284,LOC107751647,LOC107602234,LOC106580580)


Basic Information

Item Value
gene id AMCG00020897
gene name ykt6,LOC108441080,LOC107733284,LOC107751647,LOC107602234,LOC106580580
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35992397 ~ 36000532 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020897
CTTCCGCCCGGAGAGAGTGACGTGGTTCGGGGCGAAGGAAGGAAAAGGGAGTTTCTTCGCTGCCCGACACTCGGATTTTTGTATATCGAGGCAGCTTTCATTTTCGCATCTGTCACTGAACGGGTAGAGGTTGTGTACGTGTGTCTTTACCTGCCTACTTCAAAAGTGGTGTTTTTAAGTCGCGCCTCAACTCGGCGACACGAGAGAAGCGGAGAGGACTTTTCACCCGGCAGGAAAGAGACGACACACTCGGTGAGAACCAGCCTTCAGACGAGGTGGTGTCGCCGCGACGGATCAGTCGCCCAAGATGAAGACGTTGACATTTCCTTTACGGTTACGTCGTGGTAGGAGATAGTGAGCAGGTTACCCCTGACTCAGAGGCACCAAGTGTTACTGTTGCTCAGTTAGTGTGATTTCACTGTATAGCCGCTGTGCGAGTAATGGAGTTTCCTAAAGACTCAAATGTAGGGACTCGAGTGAAGGGAGGGTTGTGGAAACCGGCATAGCGGTCGTACACCGAGCCTAACCCCGCATCCCCCGGTCCTGCTTATTTGAAGATCCCCAGAGTTTGCAGCTTAAACGTCGACCCTTTTAAATGCCACCCCCGGGCTCTGAAATGGGGAACGTAAACACGGCCACTAACGAGCCAGATCTGTGCCCGGATACGAAAGCCCGAGATCGCAGGTCTGCAGGGTCCGAGACATGTGTGTCTTCATCATCTTGTCATATTAATTCAATCGAAACAACAACATAAGTGTGTGAGCTGAATGAGCGCAATCCACATGCTAAACAGTCTGAGTGTTTGGGTGCAACACATACTGACAACGACCCGTCCCCAGTTTGTTTTACACGTCAGTGCAGGATACTGCCATTGCATGGTtgtgtttttaagttatttgaTTGTTGCTTTAGTTAACGTGCATGTTCGGCTATCGATCCGTATTGAGCTACTTCTTAAAAGAGAGTGTAATGGGGTCACATAGGGCTTGGCTTGGCTTGGGGGGCTCGACTGACTGAGTGAGTCATGCTTTCACAgtgattgtttttgtgtctgtttcagGGGTGGCTTGAAGGACAAGCGACTGCCTGTCTGAGTCATTATGAAGCTGTTCAGCCTAAGTGTCCTCCACAAGGGAGCCAACAAGGCTAATCTCCTCAAAGCTGCCTATGATTTATCCTCCTTCAGCTTCTTCCAGAGGTCCAGTGTGCAGGAGTTCATGACCTTTACAAGCGCCCTGATCGTGGAGCGCTCCTGCCAAGGCAGCCGGGCGTCAGTCAAGGAGCAAGAGTATCTGTGCCATGTGTACGTCCGCAACGACTCCCTGAGCGCCGTGCTGATTGCTGACAATGAGTATCCCTCCAGAGTGTGCTTCACCCTGATGGATAAgGTATTAGATGAATTCTCCAAACAGGTGGACAGTATAGACTGGCCCTCGGGCTCCCCAGCTACCATCAACTACACTGCCCTGGACAGCTACCTTGCCAAAtaccagAATCCTCGGGAGGCTGATGCCATGACTAAAGTCCAGGCCGAGCTCGACGAAACCAAAATCATCCTGCACAACACAATGGAGTCATTgttggagagaggagagaagctGGACGATTTAGTGCAGAAGTCGGAGCACTTGGGAAACCAATCCAAAGCCTTTTACAAGACTGCTCGGAAGCAGAACTCTTGCTGTGAGGTCATGTGATGGTCGGAGCCCGGCTCGGTGGACCTGCCTCTCTCCTGGACGTCTGCAGCCTTCAGAGCCTTCACACCCCGGCCTCGTGTAGCCTGTACAGCGGAGAACTCGcccagggggtggg

Function

symbol description
ykt6 Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; cytoplasmic vesicle membrane; and cytosol. Predicted to be integral component of membrane. Orthologous to human YKT6 (YKT6 v-SNARE homolog).

NR:

description
synaptobrevin homolog YKT6

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08516 YKT6; synaptobrevin homolog YKT6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020897 True 1812 mRNA 0.52 7 35992397 36000532

Neighbor

gene id symbol gene type direction distance location
AMCG00020888 NA coding downstream 112309 35864134 ~ 35880088 (-)
AMCG00020885 snrnp200,LOC106585548,LOC106579886 coding downstream 145340 35827282 ~ 35847057 (-)
AMCG00020889 NA coding downstream 181527 35801285 ~ 35810870 (-)
AMCG00020886 NA coding downstream 201849 35779043 ~ 35790548 (-)
AMCG00020880 mat2a,LOC102784064,LOC101478089,LOC105026123,LOC106580346 coding downstream 226967 35759851 ~ 35765430 (-)
AMCG00020899 NA coding upstream 5432 36005964 ~ 36010739 (-)
AMCG00020898 NA coding upstream 41327 36041859 ~ 36066073 (-)
AMCG00020904 LOC103396926 coding upstream 90009 36090541 ~ 36100893 (-)
AMCG00020906 star coding upstream 114097 36114629 ~ 36117694 (-)
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding upstream 127830 36128362 ~ 36143093 (-)
G66416 NA non-coding downstream 55139 35926538 ~ 35937258 (-)
G66327 NA non-coding downstream 220711 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 289324 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 490085 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 558832 35433278 ~ 35433565 (-)
G66499 NA non-coding upstream 235240 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 746983 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 850538 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 868885 36869417 ~ 36870155 (-)
G66613 NA non-coding upstream 1013449 37013981 ~ 37019796 (-)
AMCG00020900 NA other downstream 5685 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 172567 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 295428 35694968 ~ 35696969 (-)
G66279 NA other downstream 299937 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 642898 35344706 ~ 35349499 (-)
AMCG00020911 NA other upstream 260461 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 1019479 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 1061063 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 1631245 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 3047172 39047704 ~ 39104867 (-)

Expression


Co-expression Network