AMCG00020898



Basic Information


Item Value
gene id AMCG00020898
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36041859 ~ 36066073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00020898
CTGAATTTGACCCTGAGGtggatgttgttttttgttctttttttcaaaAGGGGTTGCCTCCCGCCCCTGATCCTATTCTTGCTCTTTTCTTTCCTCGATCGAAGGAGTCAGGGGCTGGGCTTGAGGAGTCTTCTGGGTTTTATAAGATATGTACAGCTGCCAGAGTGTTTGCAGAAGCCTGTGAGCCGAGAGAGACGGAGGGGAGGTCTGAACACAGTGAGAAGGAGTGGAGGGGGGAGACATTTACCAGAAATCGGCACCTTCTGTGATCAGCGAgatatttcactttttccaGCTTCTGGGGGTGAGTCGTCATTTAAGACACTGCAGCTTATTCAAGACTTCAGTTCACTGTTCCTCCGCGCCAATAGAAACGGACTGGAACAGAAAAGGCAACAGACAGAGTTTGAGACGGTTTGTCGCagtggatttttctttttcctttcacttTGGGAATTTTCATAGCCTGTGGGGAACAGGATTTTTACACGACCAGGGCAAGgcactgttctctctctctctctctcctcctcatcTCTACCTCTGGAATCTGTCATTTTGTAGGCTTCCCTGCTCTGTAGATTAGAGTAGAGGATTCATCTAACATTCCTCCATAAAGTGTCTGTGAGGAGACCTGAAGAATTTATTCCCAAAGTGGGGGTGGCAGAGGGACCTGACGGCACTTCATACAAACATTCAGAGGGCAGTAGTGGGAGTCGACAGACCTCCAGTCCTTAGACTCCTGAgagaacacactgcagccacTTTATAAACTGTTAAAGATTTGGATTCATTTATTGTGAAGAAAGCAATCCTCCCAAGTTGACTTGACTCTTGTGCTTGAAGCATTAATGCACTTAGACTTTCTGGACTTTATCCTCAAATTCCCTCTCCCacagaaaactaaacaacaacCTCTATGAGTTTCATATCCTGACTGACAATTCCATCATTTGTTTGTCCTAAAGGGGACATGCTAGTATAATCTTGCCAACTTTGGCAAGTGCACACATTCAACTTCACCATACTATCCTCTTGTGCTTGATTGAAGACACTCACCCACATTAGAGCAATCATTCAGATTTGGGCAGATTTGGGGAAGGGGAGCCATCGTTCTAGACTACGTAGAGGAAGAAGGAGTCTTCCTGGTGGTGAGTGAAGATGGAGAGGAGGATTCCAGTCTACTGCTGCGTCTTGCTGTGTCTGGGTTACCTGCTGGTCTGGTGCTGCACTGCCGAGTCCCAGTCCGTCTCCTCGGACCACGATGCCACCGAGGTGCAGGCAAGGGACAGGAGAGAAGTGTCTGGGAGGAGGGAAGCCCAGGCTGACGAGCCAGAGGAGAGCCCGGACATAGCACCGGCACCCAAGAAGAAGGGGAAATCCAAAGACAAGAGCAAGAAGTCTGCTGAAGAGATCCTCGCAGCCAAGGCCAAGAAAGCATCCGAGAAGGAAGCTAAAGCCAAGAAGCAGAAGGGCCCCAAGCCAACCAAGAAACCAAAGGGTCCCAAGCCAACTAAGAAACCCAAGGCCCCGAAACCCACCAAAAAGCCCAAAGCTCCCAAGACCACCAAAAAGCCTAAAGATAAGGTCCCCAAGAAGCCCAAGGAGAAAGTGAACACAGAGAAGCTggagggggagaaggaggaagacAAGAGGGAGAAGGTCGAGCAACCAGAAGAGCAGCCCACAAAACAGCCAACCCTGGATGAAGAAGAGAAGCGCATCCTGATCGAGCTGGGCTGGGACATTCCAACCCCAGTGGAACCACCTACAGAAGCCGAAAAGGAGACGTCCCCAGATTCAGTGGATGTTTTCTTGAAACCAGAAGTGCGCCCCACGCCTGAGCCGTCAGAGGACATCAAGAAGGAAACAGAGGAGGATGACTACTGGGATATCAAATATGGGCTCCCCAAACCCCAGCCTGAAGGCAAGGAGGACTACCCTGAGCCATACACTGAGGACTGGAGACTCCCGGTCACAGCGGAACCCACCCCACCTCCCTTCGAGGGTCCATTGTACGAGTACTACGAATACGGATACAAcaagaaggaggaagaggagctggAGGCCGccaggaaagagaaagaggagaaagAAAAAGCCAGGAAGCGACTgaaggaagaagaggaggagaaggagctTGAGAAGAAAGAGTTCATCTTCAAGGAACCCAAGAAATGCCCTCCTCTGGGTATGGAGTCCCACCGAATTGAAGACGACCAGCTCCTGGCCTCCTCCTCGCTGGACCACAGCTTGGGCCCCCAACGAGGAAGACTCAACATACAGGGAGGGGAGGACGAGGACAACCTGTACGGGGGAGCCTGGTGCGCCGAGACCGAGGAGACAAAGCACTGGTTCGAGTTTGACGCCCGACGAGAGACAGAGTTCACTGGCGTCATCTCTCAGGGCAGGGACTCCCTGCTGCACAATGATTTTGTCACTGCGTACTACGTGGCCTTCAGTAATGACAGCAGGGAATGGACCACCCTGCACGATGGCTATGCAGAGTGGCTGTTCTTTGGCAACGTTGACAAGGACACTCCAGTGCTGTCACAGTTCATCGAACCCGTAGTGGCCCGCTACATCCGGGTCCTGCCCCAGAGCTGGAACGGCAGTCTGTGTATGAGGCTGGAGTTCCTAGGCTGCCCTCTCACCAAGCCCAACATCTACTACcacaaagaaaatgaagtaACCTCAGTGGACGACCTGGACTTCAGACATCACAACAACAAGGATATGAGACAGATGATGAAGGTGATCAACGAGGAGTGTCCCACCATCACCAGGATCTACAACATTGGGAAGAGCTCCCAGGGGCTGAAGATCTACGCCATGGAGATCTCGGACAATCCTGGAGAACATGAGACAGGTGAACCGGAGTTCCGCTACACGGCCGGTCTCCACGGAAACGAGGTTCTGGGCCGagagctgctgttgctgctgatgCAGTTCATGTGCAAGGAGTACAACGACGGGAACCCCCGAGTGCGCCGCCTAGTGGAGGGCATCCGCATCCACCTGGTGCCATCGCTCAACCCCGACGCCTACGAGCTCGCCTACGAGATGGGCTCAGAGATGGGCAACTGGGGCCTGGGACACTGGACAGAAGAAGGCTATGACATCTTTCAGAATTTCCCAGACCTCAACAGCATTTTATGGGGGGCAGAGGACAGGGGCTGGGTCCCCCGCATCGTGCCAAATCACCACATCCCCATCCCAGAGAACTTCCTGTCAGAGAACGCCTCGGTTGCGGTGGAGACCAGAGCCATCATTTCCTGGATGGAGAAGTACCCCTTCGTCCTGGGAGCCAACATCCAGGGAGGGGAGAAGATGGTGACGTACCCCTTTGACATGCAGCGGCCGGCGTCCAGCGGCGGCGGGGGGGGGCGGCGACGTGGacacgaggaggaggaggagagcgaggACTCATGGGCGCAGGCACAGCAGAACATGGAGAACGAGCTCCGCGAGACCAAGGACGACTCCATGTTCCGCTGGCTGGCCATCTCCTACGCCTCCACCCACCTCACCATGACCGAGACCTATAGAGGAGGCTGTCACACCGATGACGTCACCTACGGCCTGGGCATCGTCAACCGGGCCAGCTGGAAGCCCGTCGTGGGCAGTATGAATGATTTCAGCTACCTCCACACCAACTGCTTTGAGCTGTCCTTCTTCGTGGGCTGCGACAAGTTCCCTCACGAGAGCGAGCTGCCGCAGGAGTGGGAGAACAACAGAGAGGCCCTGTTGGTCTTCATGGAGCAGGTGCATCGTGGGATCAAGGGGGTTGTCAAGGACCGCGAGGGCAACGGAATCGCCAATGCCACCGTGTCTGTGGAGGGAATCAACCATGACGTCAAGACAGCTGCCAACGGGGATTTCTGGCGCCTGCTAAACCCGGGGGAGTACCGGGTGACGGTGCGTGCGGACGGCTTCTCCTCCACGAGCCGGCTGTGTGTGGTGGGCTACGAGGTGGGGGCTACGCAATGCAGCTTCACCCTGACCAAATCCAACTGGGACCGCATCCAGCAGATCATCGCCCTGAACGGGAACAGGCCCATCCGGAACGGTGGGGTGCGTCCCCTGACCCGTGCGCAAATACGTCTGCTCCGCCTGCGCCGTATGAGGCTCCGACGACTCCGCCTGCAGCGACTCCGAGCCAACGCCACCACTACGGAGCCCCCGACCACGACCACCATGCCTAcgaccaccaccaccaccaccaccacgaCCCTGCCTCCTACTACACCCCCCTACTATGAACCCCTGTTCCCGGATGGCAACCCCGAAGAAGACACAGACTATGATGCATGGATCACTGTGGACAGCCCCACCACCGCAGATGATGTCTTCTACCCAGACACCCCCGAGCCCACCGGCAACTACGAATTTGAGATCAAAATAGAGGACTATTAAAGACCAGCGGAGACACTTTTAATCTCGCACCTTACGGTTTCAGGAGGGGCTGCGTCCTTCTTTTCAATTCATGTTAAAAAATTGTCTGTCGGTCGAATGATTTCCAGTGTCAGATCTTTTAAGAGTTGGAGCCagcctccacacacacacacacaattcacagGGCTTACAGGAGTCTTTCACATCCTACCACTGTTACACACATTCGTAGTGGCAACTTGATTAGTAAGTAGTCAGCAGAAGGCAGGAGGGAGCTTTGGGTCTATTGAAACTGAAGAATGTAAGCAATGCACACACAACAAGGCACGGCAGGTACAAAAACCTTGATCATGAATGTATGAAATTAATACCAATTTATTATAATGCAGTTAAACAGAATTGTGTGTAGACTAGTGTAAGTTTGGGAACTCCATGTATGTTTCTGCACTAGCAATGCCAGCTAAAGTAAAGGATGTTTTCCCCATGTTTTCATTACCAGCAAAGTTAGGAACAGGTCTGTTTTCCTTcggctttttgtttgtttgttttccaggaaAATGTGCAGCGTGATGAAGACAGACAATGGAAAGTCATCTCTCTCATAATAAAAGCAAGAGCTTcaagttta

Function


GO: NA

KEGG:

id description
K21392 AEBP1; adipocyte enhancer-binding protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00020898 True 5023 mRNA 0.53 21 36041859 36066073

Neighbor


gene id symbol gene type direction distance location
AMCG00020899 NA coding downstream 31120 36005964 ~ 36010739 (-)
AMCG00020897 ykt6,LOC108441080,LOC107733284,LOC107751647,LOC107602234,LOC106580580 coding downstream 41327 35992397 ~ 36000532 (-)
AMCG00020888 NA coding downstream 161771 35864134 ~ 35880088 (-)
AMCG00020885 snrnp200,LOC106585548,LOC106579886 coding downstream 194802 35827282 ~ 35847057 (-)
AMCG00020889 NA coding downstream 230989 35801285 ~ 35810870 (-)
AMCG00020904 LOC103396926 coding upstream 24468 36090541 ~ 36100893 (-)
AMCG00020906 star coding upstream 48556 36114629 ~ 36117694 (-)
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding upstream 62289 36128362 ~ 36143093 (-)
AMCG00020903 NA coding upstream 109276 36175349 ~ 36178261 (-)
AMCG00020912 NA coding upstream 180510 36246583 ~ 36256510 (-)
G66416 NA non-coding downstream 104601 35926538 ~ 35937258 (-)
G66327 NA non-coding downstream 270173 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 338786 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 539547 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 608294 35433278 ~ 35433565 (-)
G66499 NA non-coding upstream 169699 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 681442 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 784997 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 803344 36869417 ~ 36870155 (-)
G66613 NA non-coding upstream 947908 37013981 ~ 37019796 (-)
AMCG00020900 NA other downstream 55147 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 222029 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 344890 35694968 ~ 35696969 (-)
G66279 NA other downstream 349399 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 692360 35344706 ~ 35349499 (-)
AMCG00020911 NA other upstream 194920 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 953938 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 995522 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 1565704 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2981631 39047704 ~ 39104867 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005025 FO704607.1 coding NC_007123.7 CM002896.2 49125510 ~ 49130237 (+)