AMCG00020903


Basic Information

Item Value
gene id AMCG00020903
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36175349 ~ 36178261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020903
ATTGGCCATACCAACTGTACTGTAGCGCTGAGTGAATACAGTGGGTAGAAATTAAACTAACGCAACGAGGCAGGTTATTTCCCTCAAAGTGACAACACGTTCACAAAGGTTAAATTAAAGGGTTAAATTAAAGCGGAAGTGCTGCTCTTTTCTCGGACCCGCACTTCCTGTTGCGAGAGGGCTACACATTTTGAATGATTCATGGGCTGAAACGGAAAAATAAGGctctttaaaattaacatttcagcATCCAGATAGCATAGTGGACCGCTACTCAGGACCATGAATTACATGCCGGGGACAGCGAGTCTCATTGAAGACATTGATATGTTGTTAATGGATGCGATGAAGACCAATGGCCACAGTAAGCTTATGCGCACGCCTCTTCGCTGCTTCATTTCGTCTTCTCTATTTGCAGAAAAACATCTAGTCCTCTTGCGAGACGGCAGGACGTTAATTGGGTTTCTGAGAAGCATCGATCAGTTTGcaAATTTAGTCCTTCATCAAACAGTTGAGCGCATCCACGTTGGCAAGAAATATGGAGACATCCCTCGAGGAATATTCATCGTGAGAGGGGAGAATGTGGTTCTGCTTGGGGAAATCGACCTGGAGAAAGAGAGTGACACAGTCCTGCAGCAAGTATCCATCGAAGAGATTTTGGAAGAGCAGAGGTCTGAACAGCAAGCTAAACAGGAGGCGGAGAAAGTAAAACTCCAAGCACTTAAGGACCGTGGACTCTCTCTCCCACGAGCAGACACGTTGGACGAATACTGATCCGTTTTgtttttgggttttgtttttgtttttttaaccggACACTTCAGTTTTAATATCAGATGGCAACATTTTTGggggaaatcaaaagaaaaggacatttaataatggtcagagagagaaaaagaagaggggggtggggggacggAACGACAATGACATGCCTAAAAATAGAGCCGGGAATGTTTCATTTTGTCTTCAATtataccattttaatttaattgaaaataatggatCTGAACCAGCGTCTTTCTTTACCTTTGATATCTGATGTCACATTGGACTTGAGGGCAAATGCAACAAAAGCACTTGTATTAAGCTGCTGTAGTTATTTTGATATTAtgtttctaaaaaaacaacaaaacattgaaaatgactTATAGTTTTTTGTACTATGCCGTCAAGTTGAATTAATGGTGGCTTTCTTTTTTGGTTACCATGTAAATAAAGAGAGCAATCTAAGAACTGTAAAGAAACTAAACGATGATGaatcttattattttgttaataattgtCAATGTTTCATTTCCAAGTGGTTGCTGGAGG

Function

GO: NA

KEGG:

id description
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020903 True 1320 mRNA 0.40 4 36175349 36178261

Neighbor

gene id symbol gene type direction distance location
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding downstream 32256 36128362 ~ 36143093 (-)
AMCG00020906 star coding downstream 57655 36114629 ~ 36117694 (-)
AMCG00020904 LOC103396926 coding downstream 74456 36090541 ~ 36100893 (-)
AMCG00020898 NA coding downstream 109276 36041859 ~ 36066073 (-)
AMCG00020899 NA coding downstream 164610 36005964 ~ 36010739 (-)
AMCG00020912 NA coding upstream 68322 36246583 ~ 36256510 (-)
AMCG00020913 LOC102294053 coding upstream 106621 36284882 ~ 36326829 (-)
AMCG00020915 NA coding upstream 694073 36872334 ~ 36874433 (-)
AMCG00020917 NA coding upstream 699214 36877475 ~ 36894127 (-)
AMCG00020918 NA coding upstream 730898 36909159 ~ 36913434 (-)
G66416 NA non-coding downstream 238091 35926538 ~ 35937258 (-)
G66327 NA non-coding downstream 403663 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 472276 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 673037 35436290 ~ 35502312 (-)
G66232 NA non-coding downstream 741784 35433278 ~ 35433565 (-)
G66499 NA non-coding upstream 57511 36235772 ~ 36236927 (-)
G66527 NA non-coding upstream 569254 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 672809 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 691156 36869417 ~ 36870155 (-)
G66613 NA non-coding upstream 835720 37013981 ~ 37019796 (-)
AMCG00020900 NA other downstream 188637 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 355519 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 478380 35694968 ~ 35696969 (-)
G66279 NA other downstream 482889 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 825850 35344706 ~ 35349499 (-)
AMCG00020911 NA other upstream 82732 36260993 ~ 36282529 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 841750 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 883334 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 1453516 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2869443 39047704 ~ 39104867 (-)

Expression


Co-expression Network