AMCG00020909 (mak16)


Basic Information

Item Value
gene id AMCG00020909
gene name mak16
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36234933 ~ 36241220 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020909
AGgactttagtttgttttgcttttcctctttgattataaacatgtatatacaacaataatgataacaacaaaagtgtgcattattaaaaataccattgaaataaaacatacacacgaAGGACAGATCTTCCCAAACTGTATGAAACACTGGTTTATAACTTTCCCCAAAGCAGATATCTGACTAAATCTAAAGGTATCATTTACAATGGTGACTGGTATTGATGCATGAGAGATTTAACAACTATAGTGTGTGTGAATTGTAATGgttttaataaaagtaataaataaagtgcCTTGATCTGGTATGCTTACATAGCACTGTTGTGTAGAACTACTTGTATGTTTGTTGGCTCTAGTGCTTTTATCTGTTGGAGAACATGTTGTCCTCCACAGATATCCTCCAtagataattatattattattattattattattattagtgtcaGACACCAAAATAGCTTTCATTTCATACTGTACACTCGTCCCTAATGTCCGAGACAGCAAACAGCCAATGAAACTCTCCCAGAAGGCCATGGTACTGAATATATTAGCTCGGTGCCGCAAGATCTTACCAGTTCAAACATTTCCCATGCATAACCTACATTTTCcaggaataaaacacacaatcccTGTTGAGAAGCCGCAGTTTCTGTCTATGTCTGAAATCGCACTAATACCCATGAATTGACACCGTCGCTTGGACAGCACACACTACAAATAGCCAGCTGTGCGATGGCGTGTGTGCGCTGATCCTTCTGGTTCAAGCAAGTGATGATTGGGTGCATCACGTGTGATGCGTGAGATGTGTCGCCCAGCCCTCTTGTTACGCTCGACACATGACCCGTCTGATCTTGAGCCGCTTGTGGACACAGGGAAGGAACTGGGTCGATCCTGGTTTCTGTTTAATCGTGTTAATTTAGATTTCACATTTACTTTGTAAGATTCGGATTCTATCGAATTCCGTGTTCTATGTCGTTGCTATGGCTCAAGTAATCACATTAATCCTGTTAGACTGAGCAGACAgctatttgtgttgtttatttcattctgttttaaatataagGTAATATATGCCCATGTTTAACGTGGGTGCGCATGAATTGTACTAATACAGGCGCAATGGAGGCTGATAAAAACGGATAGGACGCATGTTGCAATAACCAGTGATTTGGATGGCATAAGGGCTTGCTTGGCAGCTAATAATGACGGAAGCTGTGCAAGAATACATTAAATCCATTTATATTAGGCATAATTTGGTCTagattgcatgtttaaaaaaaaaaaaaaaagggttagTCTTCTAATGCATTTCATGCTTTTATCCCATAGCTGCTATATTTGAGGGTGTTGCTGatatcatgtttaaaaatgatagaaatatgaataaaatgacTTAAtgaaacaatgcaatacaaaagcCAACTGCcgaacagaaagaaaggcaggtATTTATGATAAGAAAGTGCGTCTGTCTTGCAAATCCTATTCTCGTTCAGGACGTCAGTAGCCACCTTTTTTACGCCGAACTCTCGCGAGACTTCTCGAGGCCGTGGGAAGACCCTTCCCAGCATGGCCGCTTCCTGATTTCACGTGTGCCACATCCAGGCCGGAGAGCACGTTTCACACATTTACACTTTACTGACTATATACAGGCTTTTTAAAAACGCGGCGAGTGTCGTTTCAAAAAGAGAGGCAAAATGCAGCACGACGACGTAATTTGGGACATCATTGGGAACAAGCAGTTCTGCTCCTACAAAGTCAAAACAAAGAATCAGAATTTTTGCCGGAATGAATACAACATCACTGGTGTTTGTAACCGGTCCTCATGCCCGCTGTCAAACAGTCAGTATGCTACGATCAGAGAAGAGAAAGGCCAGTGTTTCCTGTACATGAAGGTGATCGAGAGAGCGGCTTTCCCCGCCAGAATGTGGGAGAAGGTAAAACTGAGCAAAAACTACGAGAAAGCTCTAGAACAGATTGACGAAAACCTCATCTACTGGCCTCGCTTCCTCAGACACAAGTGTAAGCAGCGCTTCACCAAGATCACCCAGTACCTCATCCGAATCCGCAAGCTCACCCTCAAACGGCAgAGGAAACTTGTTCCTCTCAGTAGAAAAgtagagaggagagaaaaaagaagagaGGAGAAAGCCCTGGTGGCTGCTCAGCTGGAGAACGCCATCGAGAAGGAGCTGCTGGAAAGACTGAAACAGGGAACGTATGGAGACATCTACAATTTCCCAGTCCACGCGTTTGACAAAGCTCTGGAGGGACAGGATGCCGAGAGTGAGACGGATTCctcagagggagaggaggaggtggacgACGAGGATGTTGGAAAGCGAGAGTTTGTGGCAGACGACGAGGTAGAAGAGAGTGACCTGAGTGACTTTGAGGCCAGCAgtgatgaggaggaggaagaggaggaatcAAGTGCGGAGGAAGAGTCCGAGCTAGAatccgaggaggaggaggagatggagacgGAGGGGGCGGCCTCTGCTAGGAAGAAGTCAAAGGGCAAGATGCCTCTGAAAGGACCTTTCAGGAGGAAGAGAGCCTACGTGGAGATCGAGTACGAGCAAGAAACGGAGCCCGTGGCCAAGGAGAAAGCCACATAG

Function

symbol description
mak16 Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MAK16 (MAK16 homolog).

NR:

description
PREDICTED: protein MAK16 homolog

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14831 MAK16; protein MAK16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020909 True 2621 mRNA 0.43 10 36234933 36241220

Neighbor

gene id symbol gene type direction distance location
AMCG00020910 rnf122 coding upstream 8584 36205330 ~ 36226349 (+)
AMCG00020908 NA coding upstream 31073 36196447 ~ 36203860 (+)
AMCG00020907 dusp26,LOC102218034,LOC106904628 coding upstream 40090 36187749 ~ 36194843 (+)
AMCG00020901 bag4,LOC107702866,LOC107571962,LOC103396927 coding upstream 50915 36178925 ~ 36184018 (+)
AMCG00020902 ash2l coding upstream 120607 36101597 ~ 36114326 (+)
AMCG00020914 NA coding downstream 610275 36851495 ~ 36869578 (+)
AMCG00020919 NA coding downstream 806422 37047642 ~ 37058036 (+)
AMCG00020925 NA coding downstream 853066 37094286 ~ 37112090 (+)
AMCG00020926 NA coding downstream 917432 37158652 ~ 37165302 (+)
AMCG00020930 LOC106580522,LOC104937675,LOC107673422 coding downstream 942444 37183664 ~ 37185928 (+)
G66395 NA non-coding upstream 160512 36004619 ~ 36074421 (+)
G66342 NA non-coding upstream 377905 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding upstream 417154 35813743 ~ 35817779 (+)
G66325 NA non-coding upstream 466362 35768241 ~ 35768571 (+)
G66319 NA non-coding upstream 473901 35758108 ~ 35761032 (+)
G66524 NA non-coding downstream 483674 36724894 ~ 36725129 (+)
G66528 NA non-coding downstream 565100 36806320 ~ 36806577 (+)
G66602 NA non-coding downstream 832459 37073679 ~ 37074634 (+)
G66696 NA non-coding downstream 1047294 37288514 ~ 37288841 (+)
G66700 NA non-coding downstream 1060028 37301248 ~ 37301598 (+)
G66362 NA other upstream 326531 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 484487 35747156 ~ 35750446 (+)
G66149 NA other upstream 1069948 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 1085515 35147603 ~ 35149418 (+)
G66060 NA other upstream 1226611 34967844 ~ 35008322 (+)
G66506 NA other downstream 13479 36254699 ~ 36256511 (+)
G66551 NA other downstream 673595 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1325816 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 1875842 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 4079893 40321113 ~ 40321821 (+)

Expression


Co-expression Network