AMCG00020911


Basic Information

Item Value
gene id AMCG00020911
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36260993 ~ 36282529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020911
atggagCACAAGCAAAAGGTTATGTGGCAGGATATCTTACAGCAAGGTTTTGTAGAGAGTTCCCCTTCCAGTGTGCCCAAAACGATGCCCATCTTCAACCCTCTACAATGGCTGAAAGAGGGCAGGGAGTCTCGGAGGCTGGTGCTGGTGGTGGTTTGCGTGGCTCTCCTGCTGGACAACATGCTCCTCACAGTCGTGGTGCCCATAATCCCCAGCTTCCTGTATGCCACGGAGTTCAAGACGCTGGAGCTCATCCCAAACCAGACCTCTCCTCCCACACCACAGGCCTCCACAGTCCCAGCCTTTTCTTCAGTCTTCTCCTTGTACGACAACGTGACCTACATCCCCACAGACTCCACAGCAAACGCATCAGCCCTCGTCACCAGCAAGGCTTTCAACGACTCAACCACCCAGATGGAGACCGCGATCCCCGCGAGCCACAACAGCTGCGTGAAGAATAGCCATTTCCTGGAGGAAGAAAACGTGCGTGTCGGCCTTCTGTTTGCCTCCAAAGCTTTAGTGCAGCTGCTGGTTAACCCCTTTGTGGGTCCCCTAACCAACAGGATCGGATACCACATCCCAATGTTTGCTGGCTTCATCATCATGTTTGTGTCAACAATATTATTCGCCTTCTCAGGGACGTATGCCTTATTGCTTGTGGCTCGGGCTCTTCAGGGAATTGGctcctctttctcctctgtGGCAGGTCTGGGGATGCTGGCCAGTGTTTATACAGATGACAATGAACGAGGATTCGCCATGGGGATAGCTCTGGGGGGGCTAGCAATGGGCATCCTTATCGGAGCCCCTTTTGGCAGTGTGATGTATGAGTTTGTTGGAAAGAGCGCCCCCTTCCTCATTTTGGCCTTCCTGGCTCTGTTTGATGGCGCCCTGCAGCTATGTATACTCCAGCCGTCAAAGATTTCTCCGGGGAGTGTGGAAGGCACACCTTTGCTAACCCTGTTACGAGACCCCTATATACTTATAACTGCAGGTTCCCTGTGTTTTGCCAATATGGGGGTGGCTATGCTGGAGCCCACCCTCCCGATATGGATGATGCAAACCATTATCTCCTACCTCATCGGCACAAACTTGTTTGGTTTCCTTGCTAACAAAATGGGCAGGTGGTTGTGTTCCATGATTGGCATGATGATAGTTGGAATCAGCCTGCTGTGTGTCCCTtttgccaaaaatatatatgggcTCATTGGTCCTAATGGTGGTCTTGGGTTTGCAATTGGTAAAACTGGGGGTTTCACCTCTTTAAAAGGaacctctgtgtctctgtctccggCAGGAATGGTTGACTCTTCAATGATGCCAATTATGGGGTACCTGGTGGACATTCGCCATGCCTCGGTCTATGGCAGTGTTTATGCCATTGCTGATGTGGCTTTCTGCATGGGATTTGCAATCGGCCCGTCGACTGGAGGAGCCATTGTGAAAGCTATAGGCTTCCCCTATCTCATGGCTATCATCAACCAGGAGTGCCCCATGCACGTCAAAAGCTACAACACTCAGAAGATGCACCGCGAGTTTCCCCTGAGCGATCTGAGCGATGAAGAGGAATCTGAAGAGTGA
>TU83158
ggagCACAAGCAAAAGGTTATGTCAGTTTAACAGTCTTTTACAGTGttggttatatttatattgcacaTTCTCTTTTGGGATCTCTTCTTGTTTCCCATTCGTCCTGTCCGACCCCAGCATGTTCATTTATTCACCATATGGAGAGGATAAATCCACTCAGATCAGATATCAGATATCTGCAAAGGCTTTTGCTAAGAGTTCTCATGCATTATCCTACATAACTACCTGTGCTAAACTGCATCCATTCTCGGTTTCTCCACCCCGTTAATCCTCCAAAGAGTAATCGAAAGTCCAAATTTATCTAACTCGAGCTACAGCCTACTTAGAGTAGCATATATCTAGTTTGTCAATGATAGGACAGCAAGATTGCTAACTATATCACTTAAGGATCGAAAGCCAGGGAAAAACTGTGCAGAGATTCTCCACAGCCCTGTGGCGCATTCAAATTTTGTCCACTGGAGTCTATTTTCTGTGTGACATTTTGTTCTGTAGTACgtgattatattttgcatttgcatactttgattttctctctctgtgttgccCAAAACATGCatgggttttattttccttttgttgatttcttttttactttcacaacaacaaaatgactACATGCATTATCAGTACCATATCCCTTTAAATATAGTTTCCCGGGCATGATAAATATACCTACAGCCACAGTGACACAATCCCAGGCGACCGAAGGAGAGGGTTTTTTATAGTCATCCAAGATGTCCTTTGGGATAACACTCTTccattatgcttcttgtgttaacAACGCTCTTCGCTTAATTAATTTCCCGAGCTCAATGGCTTGTGCGCCAATGGAGTCCCCATTAAGGGCGTTTAAAGTTGTTTGGGGAAGCTCTGGTCAAGTAGAGACAGGGCTTCAGTGCGTCAAACTGGAAAGGGAGCGTCTGTTGCCACACTCTGTGCCCGCGAGGTTGCGCTATCGGCGTTGGACTGTGCCTGCAGGGGATACATTTTCGTAAACCGCACTGTGTCACTAAAAGTATGGGGGTAAACCCTCCTGAAGCTTGTGTTATGTAGAGGCTGgtgggttttgtgtgtgtggttttgttttcttgcttctgGGGAGGCCACCGGGACTGCTTGTGTGTATTGTGATATTCATGAACAGATGAGTACTGCCTGCATTGGGGGAAAGTCTTGACAGGGGCCCGTACATCCTCCACACTCAGCTTCTGCTTGTTGTGCACATGGTGGGAAGTGTTCGCACTCTGCATTTGAAACTTTGGTACACAAGTGTTGATTGATTTAGCtgcattaatataatttgttaaagaacataagaaacgtaagaaagtttacaaacgagaggagcccatccaccccatcgtgctcgtttggtgtccattaatagtgatccaaggatcctatccagtctattttgaaatgttcccaaattttcaactTAAAGTACATTAATTTGTCTATCTTTTCCATGTTTTGTCTCTGCATTTTTCAGTATGGAGTGGCAGTCTAACATTTGAATTCGGTTCAGTTAACGGAtggttcaacaaactctgaaaagatatCATTGACAAATTGacaaactaaatgaatcactgtATAACATAGTTTCCCATGCAGGGTGTGAATACTTGCATCTACACTATAAGTAGCATAACACATGAAGAATTGtcttatttatacaatttaagGCTGAAGGCTTGGCAGTCTcaaaaaaacaagcatacaAACACTtctaaaatgcaatttatttttgtttttctaatgatATTCTGATTTCAAAATCCAAATATCACAGATGagaaattgtattcttgaaGGGCACTGCAAAGACCTATTATCTGCCAccacaaaactgaaaacaagaacattttagTAGGCAATtttgaaacatatatatatattttttttttctcctcttatTTTCCTCAAACTTGTACAAAAgtgagctttttgttttcttttcaacagGGTAAAAGATCAGCGGTGTTCCTGCGATAAAATGGCTGCAAAATTTTcagtatgcatttatatattcattttgtcTGTTAGAACTGCAAGCTGACTAATGGTGTTAAAAGAGGTATTCAATGTGACGCATTTATCTCACTGGCTGCTATCtctgctaaataaatgaattatagTTGTCTCTACTAGGGACAGTTAATCCGAAACCAAATTTTAAAAGCCACACAGTACAGGAGAACATTTTGCCATAGAACGATAAGGTGTGAAACTATCACTGCAACATTGAAGGCTGATAGGCTAATGCTTTTATCTGTATGTATTTGGTTGTGCTTTTTTGGGGTTTAAATTCCATTCTTAAAACTTACCTTTAAGATTAAGTTTTTATCATTCATCTTTTTCACATTAAATTCTATTATTTTTCACcagcattttttatatatatataaatatacagagagtggcatcatacattttttttaaagtggcaTAGAagttgtgaaatatttaaactgtgattttgtgtgtttatgagtGTATCTGGTGGGcactaaaatgattaaaaactaataacaataattgcaGTTGGAGACAATTAGCATACAATAGAGAAATTGAACCAGGACAATGGAAAATACAGGCATacacatgtttttcattttcaaaactgcttactttttcttatgtttcaaattataagattattttattcaccTCAAATTTGTGAGTTTTTTATGATGATGTACTGTACTATAAACTGCTTGCCTAATGTGTTAAAGTTCAGCTGCTTAAGAACAGAGAGGTGCTATGTGTATTTACATCTCTGTGGAAAAGTGTGGTATTCCCTCGCTGCTTGAGGAAAAGCTATGGCTCTGTTCAGTTCCACACAGTGGGGGGCAGACCTGGCCCTTTGGGGTTTCATTCCTGCAGGCTTTGTAGATCTCTTACACTCCCAACCAACTAACAGCCTTTTAAATAACTCTTAATGGGTTACAtttagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagagttTGAGCTGAGTAACTGAGAACTCAAAATCAGAAGACCCCATTTCCTACCAGGATCAATTGACTGCCACTGGTTTACAGGAATCCAGGGCACAGTTACATAGAACATAATGTACAAGGGCAGAAGCACAATGGGAAGGAAAGAAGAcacaaatgtggaaaaatgaCATATAATAGGGTTAGCCATTACTCCATCCCCAGTCCCAGTTAATAAAGTGCTACAAAAAATTACTGCTGTTTAAAAAGACCAGCACTTCAATCCACTCATGGCCCTAGAAGCTATTTTgtgcagttttgtgtgtgtgtgtgtgtgtgcaatgatacaaataaaacatatttgtaaacaGAAATTGTTTCCCAAAAAatatgctgctgtttttttttgtttgtttttaatttaaagatcaATTCAATGTACTAAAGCAACAAGTAGTGCTACTGCCCCCTCCCCACAAAAAACGGTCAGAAAAATGACCtaatacagtaaaaacaaaccagTTCTACATTTTCCCATGTTAACTTTTAAAGAGGCACCCACcctttttttattagatttctTGCCTTTCCTTGGTTCTGTTGTCAATTATATagcataaaaaacatattttttaaaaaagaaatggaaaaaaatgacaaaacagtgtaattatttaTGTGCTTCAATGTATGCTCCACTGAAACCAAACCAGTCTGGCCCGGTTTTCAGTTACTgaacaacattgtttttgttgttaacaTCTTGGTCCAGCTAGAGAGCAGTCTGATTTGATTGAATGAGGGAATACAAAACAGATGCATTCATAGTTTtctgacatttctttttaattacttctGAACAGTGTCAGTGTGGGATTATCTTATCCCCTTGCTTTGCTTCTTTTTTGCTGCTAGTCAGATTCCTTTAAAAGTTTGCTTGTAACTTGAAAACCCTATTgcttttggtttggtttcatttttcccccacccaagtaaaaaataaataaaataaataaaaaataaagacattttccatttcGCATGGCCTGGGCTTCATATCACAATTCTTGTGCCTTGTATAACTACTGTAAATGCTGAATGTTGTACATTAAAGATGGGgttgaatttaaacaaacagaaaaaaattaaatatatttaaaaaatcatatattaCTAGGCTGCAACAGCTTTTTAGTGCTGAACATACATGTTTGGTAATGCCAGGACAGCAGTGTGGtatactatatttaaaattatggacattttggatgttttatgtacagtagaatttgcaaatgtatatgcagccttttgaaaataaatgtacagttggGGGGGATAaaagatatttacatttagttgaataaaaagtttttc

Function

GO:

id name namespace
GO:0015893 drug transport biological_process
GO:0055085 transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020911 False 1581 mRNA 0.51 17 36260993 36282529
TU83158 True 4378 lncRNA 0.37 1 36278150 36282527

Neighbor

gene id symbol gene type direction distance location
AMCG00020912 NA coding downstream 4483 36246583 ~ 36256510 (-)
AMCG00020903 NA coding downstream 82732 36175349 ~ 36178261 (-)
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding downstream 117900 36128362 ~ 36143093 (-)
AMCG00020906 star coding downstream 143299 36114629 ~ 36117694 (-)
AMCG00020904 LOC103396926 coding downstream 160100 36090541 ~ 36100893 (-)
AMCG00020913 LOC102294053 coding upstream 2353 36284882 ~ 36326829 (-)
AMCG00020915 NA coding upstream 589805 36872334 ~ 36874433 (-)
AMCG00020917 NA coding upstream 594946 36877475 ~ 36894127 (-)
AMCG00020918 NA coding upstream 626630 36909159 ~ 36913434 (-)
AMCG00020916 NA coding upstream 631958 36914487 ~ 36931628 (-)
G66499 NA non-coding downstream 24066 36235772 ~ 36236927 (-)
G66416 NA non-coding downstream 323735 35926538 ~ 35937258 (-)
G66327 NA non-coding downstream 489307 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 557920 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 758681 35436290 ~ 35502312 (-)
G66527 NA non-coding upstream 464986 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 568541 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 586888 36869417 ~ 36870155 (-)
G66613 NA non-coding upstream 731452 37013981 ~ 37019796 (-)
G66685 NA non-coding upstream 985253 37267782 ~ 37268223 (-)
AMCG00020900 NA other downstream 274281 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 441163 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 564024 35694968 ~ 35696969 (-)
G66279 NA other downstream 568533 35650980 ~ 35692460 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other downstream 911494 35344706 ~ 35349499 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 737482 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 779066 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 1349248 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2765175 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 4274601 40557130 ~ 40640339 (-)

Expression


Co-expression Network