AMCG00020916


Basic Information

Item Value
gene id AMCG00020916
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36914487 ~ 36931628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020916
ATGACActgccttttcttctttttccttcatttcttcCTGCAGCATTGCTGGAGGTTGACGAACAGCTGATTTCAAAAACCGCTGAGCATACGAACACTTACTTGGATAAAAATTCCAACCAGAATGAGATCATCACCCTGGCCTCCAAGATCCCCGCTGCTGACGAGTCTACCCCCGCCGGAAAGGAGATCATAGATGAGCTAAATAATGTCACTGTTGTGGCAAAAAATCTAGCAGATCTTCAAATCTCTGAGGACATACGGCAGCATAACCTTAAAGTGGATTCCAAGCTGACCCGCCCGCATTCGGTGACTGCTGACTCTGATATGTTGGATGAGCCAATGGTGGTCTCCACTGAGGAATCCAACAATGACCGGGGTGAGGAAACCAGCTTGGATCCTCAGGTCAAAGCCAAGAAGACCCGGCCTCCATCGCTTGACATGAAGGGAGTGCTGGACTTACCGGACCCGGCTGAAGTTGAAGATGAGATCCCCGTTCCCAAAGCGACCAACAACTTCAACCCTGAGGACTACGATAGCAGTTCCAAACTGCAGAACTCCAGCGACGAGGCTCCAGTAGAACCTGTCAAGGCCGTGAAGATGGAGTTCGGGTTGACGGACAATGGTGAAAATGGGGAGGTGAAGAAACCACCGCCCCGAAAACTGGGCAAAAAGGGCAGCCGGCTTACCCCCAAAAAGCAAAAGCCCAAACCAACAGAGACTGGCACAGACCCTGCTCCTGAAGCTCAGAACTTGGACGACATGCCCATCCCCACATCCTCCTATACCTTTGACCCCAGCAAGTGGGACGATCCCAATTTCAATCCGTTCAGCGGCAGTGCCAACATGGGCAGCTCACCTGTCCTGCCTAAAGGATCCTACAAGTTTGACCCAGACAGCTTTGATGACACTGTAGACCCTTTTAAACCCTCCAAGGGGTTGCCTATTGACCTATCCAAGGACACTCATGGAGCTGATAAACTCATAGAGGACATGGAGACCCAGAACCTTGATCTCCCTCTAGAGGCGGAGGAGAAAGGGAGACAGTCGCCAAAGAAGAACAAATCCAGATTAATAACggGTGCATGCAAGGTGAAAAAGTATGAAAACCAATCCCTGGTTTTGGATATCTGTGGTCAGGAGGATGAGCCCGTGGTGTCGGAAGTCCCCGATATCGCCAACCGTGTGGGTCACGCCACTGACGAGGAAAAATGGGCATCCACCGCTTCCACCCAGAAGCCAGGCAAGCCCGAGATGAAGGGCGACCAGGACGACGAGTTCTTTGAGTGCTCCAACGTGCCAAACTCCACCGTCTCAAAGAAACCGACCAGCGACGGGCCTGCAATAGGACTTACTGACAATCTGGAAAACAAAGATTCCTGCTCTGCTTATGATGACCCAGCGATCACCAAAAGCACAAAGGTGACAGGAAGTGAAGGCCAAGGTACAGGAAGTCCTGTTCTAGACACTATCTGCATCAGTGAGGCAGACAAAGCAGCCGTTCTGACCCTAATTCGAgaagagATCATTACTAAAGAAATTGAAGCAAACGAATGGAAGAGGAAATACGACGAAAGCAGACAGGAAGTCATCGAAATGAGGAAAATTGTGGCTGAGTACGAGAAGACTATTGCGCAGATGATAGAGGACGAGCAGAGGACCAACATGACTTCCCAGAAGACCATGCAGCAGCTCACCCTGGAGAAAGACCAAGCGCTGGCAGACCTGAACTCGGTGGAGCGCTCTCTATCCGATCTCTTCCGGAGGTACGAGAATATGAAGGGGGTCCTGGAAGGATTCAAGAAGAATGAAGAGATGTTGAAAAAGTGCGCCCAGGAGTATCTGGCCAGAGTGAAGCAGGAGGAGCAACGCTACCAGACCCTCAAGATCCACGCTGAGGAAAAACTAGATAAGGCCAATGAAGAAATCGCTCAGGTGCGCTCCAAAGCCAACTCCGAGAGCGTGGCTCTTCACGCTGGGCTGCGGAAGGAGCAGATGAAAGTGGAGTCCTTGGAGAGAGCCTTGCAGCAGAAGAATCAAGAAATCGAGGAGCTCACCAAGATCTGCGACGAGCTGATCGCCAAACTGGGCAAAACGGACTAAACCTCCAGGACGGCCCGCCCCCAAGGCCCAAACTCCTTAACCCCTCCATCCCCGCCACCCTTCCCACCAACCCCTTCTTCAACACTGTGCATGTGCCAGCTAACAGCACCTAGCCTTACCTAGTGACCAGCCACGCCCAGTAGAATGAGATCTGCCCCTCTTTGCTGGCTAAATTAGGCATTGCATTCAAAAAGGAAAGGGATCACACCCTCGCTGCAGATTGCTCGTATATAAAGTCCATCATCTGGCCTGCACACCCTGCGCTCTCTCACTCAGCCACAGTCGTTGGAAAGAAGACtggaaagaaggagaaaaaaaataataaatccactaaaaacatcattttcttttcccaaGTAGCCTCCCCTTCCTTGTGGCCGTCATGCATTCAGTGCAGCAGGGGGAATTGCTGGAAATATGTACGATACGAGTGCAAAATGTGGCAGGACTATGTTGCCATCTGCGTGCTTGTGCCACGCCATCGTTGGTATGCACACCATActttctttctgttgtttttagttgttaTGGTGTCGCCGTCAGCTGACATACCAGGCAAGATTGGGATTGGCTTTTCCAGAGATTAGAGAGGCTGGGAATGAATCAAACCTGACCTATACTGGGAAGTGGATCCCCTCCCTTCCCTTCTTTCCCCACAGCACGGTGAAAGCCTGACCCTAAATGTTTACGCAACCAAATTGCTGCTACCATTTCAgtgaggagaggagaaaaagaaaatgaaaagtgaccaattatttttttgagCCTGTCGTCTGCAGGTTTGAAGTGTACATACAAGCACATAGAAGgatttgctttaatttctgttttgttttcttggccCTTGTGGACCAAGCGCTTTGGCTTGGCTGTCAATGGGATTGCGGAGAGCTTTTGAAATGGGTAGAACACAATGTAAGTCTCAGTTTGTTTGCCCAGTTGCAGATTATACTTCATGGCAGCTGCTGAGCAATTACAGTGACCTCCATTGGAAGTCACAGGTTGTGCTTTTTGTTGCTCTGATGCGTTTTCTGAGAATTGCTTatggaggggaagggggggatcTGAGCTTATGTCTCCCATTGTTGTGTCGGGGCTGTTTTTGACTTAAACACACCCCCTCAAGGCAGCAAGAGATGTTGTATTAGCTGTGTGATGTAtgaaatattgtgtttgtacattGCTGCCGTTTATTTCCAGAGATGCCGCTTTGTCACTGCCATTCGCTTTGCTACAGAAACCAGTCTCAGAGACGGAGGACACTGTTTTCACCACTGAAATCAGTACATTATATGAGACGTTGTATGAGATGGCAAAAAagaattggttttgtttttgttttcgatattattttaaatttgtcgTCCGTGTGATTTCAGCAAATGCTTTCAGCCCATCCAAATGCCAGAGAAATTACTGTTCTCGCCACCAATACTGTTTTATCCATATACTCCACCAGCATTTCAATGGGTATAATTTGCTGTCACATAaactttgaaaatacatttactgcACTAGCTTTTCTGTCCACAAACCTTGGCATAAGCAAGCGACTAAAgaggaaggaagaaaaagatTAAGATTATACATTAAATTGCTGTTAATTGCTCATTATTTcatcaaatacatattgttattCGCAGGatatattgtatgttatttttcttcttctcattattGTGAGCACTTAATCTCCAAAGAACTGGTAGAACAGGTATACTTGTAAAATGAacaaagtttttaaaatattttcacgGACTCCGGGGGGGAGGGTCAGAGCAGAACAGCACCTATCGTCTTGTTGTTGGCATTGACATTtcagggagacacagagacatgtttttaactctttttttattatttaaatttttttatatgtacatTGAGTCCAAGGGTGTGTTTGCTCCTTCTTTTCCCCCGGGCTTTTAAGTTTAAAATCCTGACATAGACAGATTCACAGTGGCGTTTGGACCGGCCCCCAAAATTAGGTGCAATCCCAAACTGCCATCGTTGACCGTTCCCTGTATCAGAGAACTGAGCAGGGAGACGGTTGTGCACCACGAGGCAGTGTCTACACTGACATCACTCCAGCAATACTCCGACCATAGAAAATGGACCTTTAATGCACTCCAGTTGTCCGAGCACATCAGCCTTGCAACGCATCATTTTCGCTGTAATCGACTGCCAAAACGACATCGCTATCTTTGTGCCAAATGTACACGGTATGGTTAATCAGTCTAGAGAGCGCGTTGAAAACACAGAGAGCATACTGTTCTTTTGCTGTGACTAATCCATCCTTTTCTTCCCTCCCCGTCATTCTTGAATTGCCGCCATCTgactgtgtatgttttatacGCAAAAAAGAAACGAGAACCCttcttttttaatgtcattaatatttgtaaagtGGAAACTTACACAGATGTAATGAAATTATAATgtttactaatatatatttttgtccatATCTCATTGCCTGAATAAAAAGTATCGTAATTATTAGTCTTTCAGCATCTGTTTGTACTGTATGTAACTGTGGTTCAATAAGTGACAGAACCAGCCatggaaaagacaaaaaagcacaaaaacccTTCACACCCAGATATGTAGCAAGAAAGAAGTTAAATGATGGGGGGTGCAggtgatatataatatatctgtTATGTCCTTCAGTTATGTCACTGCAATTCATGTTACGAGATTTACATCCCTGGTTTTGCATCCACTAGGTATGAAAAGGATTTAGTTCCACTCTCTGGTTTTCTAGACTGTCGTAAAAGCCTCTTATGCTGGAGATTAATTGCTGATGACATTCACACCATGCGCGTCAGACATGGGGATTAACGATGAAGAGGGGGTGACGGGGCTTGCCCTTGTGTTAA

Function

GO: NA

KEGG:

id description
K14281 TACC1; transforming acidic coiled-coil-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020916 True 4985 mRNA 0.46 11 36914487 36931628

Neighbor

gene id symbol gene type direction distance location
AMCG00020918 NA coding downstream 1053 36909159 ~ 36913434 (-)
AMCG00020917 NA coding downstream 20360 36877475 ~ 36894127 (-)
AMCG00020915 NA coding downstream 40054 36872334 ~ 36874433 (-)
AMCG00020913 LOC102294053 coding downstream 587658 36284882 ~ 36326829 (-)
AMCG00020912 NA coding downstream 657977 36246583 ~ 36256510 (-)
AMCG00020924 NA coding upstream 42781 36974409 ~ 36998756 (-)
AMCG00020921 plpp5,LOC107553701,LOC107678050,LOC107720719 coding upstream 68797 37000425 ~ 37012235 (-)
AMCG00020920 NA coding upstream 137887 37069515 ~ 37074577 (-)
AMCG00020928 NA coding upstream 183915 37115543 ~ 37122859 (-)
AMCG00020927 NA coding upstream 216866 37148494 ~ 37155287 (-)
G66536 NA non-coding downstream 44332 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 62851 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 166744 36747515 ~ 36747743 (-)
G66499 NA non-coding downstream 677560 36235772 ~ 36236927 (-)
G66416 NA non-coding downstream 977229 35926538 ~ 35937258 (-)
G66613 NA non-coding upstream 82353 37013981 ~ 37019796 (-)
G66685 NA non-coding upstream 336154 37267782 ~ 37268223 (-)
G66740 NA non-coding upstream 563495 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 805135 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 967839 37899467 ~ 37899878 (-)
AMCG00020911 NA other downstream 631958 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 927775 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1094657 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 1217518 35694968 ~ 35696969 (-)
G66279 NA other downstream 1222027 35650980 ~ 35692460 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 88383 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 129967 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 700149 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2116076 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3625502 40557130 ~ 40640339 (-)

Expression


Co-expression Network