AMCG00020917


Basic Information

Item Value
gene id AMCG00020917
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36877475 ~ 36894127 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020917
atgCCTTATGTGGATCGGCAGAATCGCATCTGTGGCTTCTTGGACATTGAAGAGaatgagcacagcaacaagttTCAGAGACGCTACTTCATACTGGATACCTTGGGCAACTTCCTGCTGTGGTACATGGACAACCCACAGAACTTGCCTAAAGGTACGGAAGCAGTGGGCAGTCTTCAGCTGACATACATTTCCAAGGTCAACGAAGCAACAGTAAAGCAGAAACCAAAGACTGAATTCTGCTTCGTGATAAATGCTTTATCTAGACGCTATTTCCTTCAAGCTAACGATTCTGACGATCTGAGAGACTGGGTGGAGGCTCTGAATAAAGCCACTAAGATCACTAATGAAGACGACATGGAGATGGGGGAGGCGCACAGCCTTCTCAAGAGATTGCCCAGCAGCTCTGCAGGAATCAGGCCAGGAGTCGTCAAGTGCGGCTACTGCGTCAAACAAGGAAATGTGAGAAAAAGCTGGAAAAGGAGGTTCTTCACTCTGGACGACAACTCTGTCAGTTATTTCAAATGTGAAACGGACAAGGAGCCCCTCCGTTCGATTCCTTTGAAGGATATACAGAAAGTCCACGAATGCCTGGTCAAATCGGGAGAGCTGCTGACGAGGGATAACCTTTTCGAAATCATCACAAGCTCCCGGGTTTTCTACATACAGGACACTTCTTTCAATCGCTCCACTTCGCTGTACAGGTACCGCAACAAGAATCCGCAAGCTGCCAGCGGGCGCGGGCGGCAGGCAGGCGATGAAAAGAAGGCCCCTCTGGTCAAGTCCAGCTCCATAGCTCCTTCCTGGCAGCCCTGGACCCCAATCCCTCAATCTAGCCGCTCGGCGCCCTCAGACGTGACATCCATAGAGGAGGTCACGGGGCAGTTCAACTCCCTGCCCCCCGTGCCCACAGGGGAGACCGAGGAAGTGGACGCAATGGGCAAACGCAGGCGGCATCGCTCCCAGCCGCAGCCCGCCCTCGACAAAGCGTTCCCCTTCAACATCGATGATGAAAGTATTCGCACCACTGATGtgtag

Function

GO: NA

KEGG:

id description
K23796 PLEKHA1_2; pleckstrin homology domain-containing family A member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020917 True 1038 mRNA 0.52 9 36877475 36894127

Neighbor

gene id symbol gene type direction distance location
AMCG00020915 NA coding downstream 3042 36872334 ~ 36874433 (-)
AMCG00020913 LOC102294053 coding downstream 550646 36284882 ~ 36326829 (-)
AMCG00020912 NA coding downstream 620965 36246583 ~ 36256510 (-)
AMCG00020903 NA coding downstream 699214 36175349 ~ 36178261 (-)
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding downstream 734382 36128362 ~ 36143093 (-)
AMCG00020918 NA coding upstream 15032 36909159 ~ 36913434 (-)
AMCG00020916 NA coding upstream 20360 36914487 ~ 36931628 (-)
AMCG00020924 NA coding upstream 80282 36974409 ~ 36998756 (-)
AMCG00020921 plpp5,LOC107553701,LOC107678050,LOC107720719 coding upstream 106298 37000425 ~ 37012235 (-)
AMCG00020920 NA coding upstream 175388 37069515 ~ 37074577 (-)
G66536 NA non-coding downstream 7320 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 25839 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 129732 36747515 ~ 36747743 (-)
G66499 NA non-coding downstream 640548 36235772 ~ 36236927 (-)
G66416 NA non-coding downstream 940217 35926538 ~ 35937258 (-)
G66613 NA non-coding upstream 119854 37013981 ~ 37019796 (-)
G66685 NA non-coding upstream 373655 37267782 ~ 37268223 (-)
G66740 NA non-coding upstream 600996 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 842636 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 1005340 37899467 ~ 37899878 (-)
AMCG00020911 NA other downstream 594946 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 890763 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1057645 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 1180506 35694968 ~ 35696969 (-)
G66279 NA other downstream 1185015 35650980 ~ 35692460 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 125884 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 167468 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 737650 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2153577 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3663003 40557130 ~ 40640339 (-)

Expression


Co-expression Network