AMCG00020922


Basic Information

Item Value
gene id AMCG00020922
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37061595 ~ 37067805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020922
GAAGAGGAAGTGCGGCGACAGACAGACGGGCAGTGACAGCACAGGCTCGCTTTCTTTCATTGCCTCTCCGATTGCAGTCAAAAACACCAGCTAGGTGTCATCTGCATcaatagatttatatatttagctgAATGCTATAAGCAAAAAGTGGTGATTCTGCATATAGGTGGACTGTGCACTAGGGGAGGCTGGGACCGCCATGCCGGAGCACAACGATGTGAGCCTCACCCCCGAGCAGCGGGTGCGCGCCCTCACCAAGATGGGCAGCTCGGTGGACGTCAACGAGGATGTGCCCCCCCGCCGCTACTTCCGCTCGGGCATGGAGATGATCCGCATGGCGACCGTGTACACGGAGGAGGGCAACACGGAGCGCGCCTTCATCCTCTACAACAAATTCATCACGCTCTTCATTGAGAAGCTTCCTAAACACCGGGATTACAAAACTGCCAATATCCCTGAAAAGAAGGAAACTATCAAGaagCTGAAAGATATCGCGTTCCCTCAAGCCGAGGAGCTGAAAAAGGACCTCTTGAAGAAGTATGAGAAGGAGTACCAGGAATTCCTTGTGAGGAAGAAAGCAGAGGAGGTGGCCCTGACCAAGGAGCTGACCAGACAGAAGGAGCTGGAGGCGGAGAGACAGAGGGTGGAGGAGCAGCGGCGGCGGCAGAAAGAGCAGGAGCAATTCAGCGCCTTCGAGGAGATGATCCGGCGCcaggagctggagaaggagaggcAGCGCATTTTGCAGGAGTTCGGTGCCCCCTCCGCCCCCCCGCCCGATACCCCCCTTGTGCCAGGCATCCAACCCCCCCCGCAGCCCCCAGTTGTAACCCCCACGCCCCCCCAGAGCCCAGGGAGCACCCCCACCCACACCCTGCCCTCCGCACCACTCCCACCCCCCTCGTTTGACCGGTCCCTCAAGCCTGGCACACTGGCCACCCCTGAAAAAGATGTGATGGTGGACGGGCTCCGGCAGTTGGCCGTGCCCGCGGAGCTGTGCCACAAGTTTCTGAAGCTGGCAGAGTCTAACACCGCGCGGGCTACACACAATGCCTTCACCGTGACCCACGTGGTGGTGCCCAAGCAGAGCGGTGGGCCGGATTACTGCGACACAGAGAACGAGGAGGAGCTGTTCCTGGTCCAAGATCAATATGATCTCATCACGCTGGGCTGGATACACACACACCCCACCCAGACGGCCTTCTTGTCCAGTGTGGATCTGCATACCCACTGCTCCTATCAAATCATGCTGCCAGAGTCCATCGCCATCGTCTGTTCGCCCAAGTTCAACGAgaCGGGCTATTTCAGGCTGACCGACTATGGGATGGATGATATCTCGTCCTGCAAGCAGAAAGGCTTCCACCCCCACCCAAAGGAGCCACCCCTCTTTGCGGCTTCTGGGCACATAACGATCACCAACGGGAGTGTGAATGTGATGGACCTCAGGTGATGAGACCCACCTCTGATGAGAGTCTTCTGTACTTCAACATCTGGACTTGCTAGGCCCAAAATTGttctatttaaaaagaaagaaagaacgaaagaaaaaaacagaaaagcgaAAAGCAGGCCTCCTCAACTAAATTGATTGACTGCTCTGGCGACACAGTTCAGTTCACTTCTTCCTTTTAGTGAGCTTGTGCAGCTGTAGCCCCTTCGTGGGCCGCAGAAACGTATTCACAGTATCCGTATGAGTTGCAGTATCTGTCACCTCCACAGTTTGCCTCTCCTGGTTTGGCGTAAAGCACTTTAAGAACACCCACCCTAATCACACTGGACTGTCGAGTCTGGATTTCTCTCGGTGCAACACTTCCACATGTGGTGTGGGAGTCCTGTTGACCGGGTGTCTGCTTAGGCAACGTCACGCAAGCCTGGTTGATCTGATGTTAATGTCACTTGAGTGTGTGACTTTTTACATAAGTCTtcgaatacatttttattcccTTCCAGGACAGTGCTAAGTTTAGGTCAAGTCGTACTGTAATACAGTTTTGTATTACAGAGCTGTGATTTAACCTAGATGCATTGTAAATGATACGTTTCTTGCATGGGATGGGTTATTGTcacaaaaataagcatttttctTCAACACTAGACTTATTCTCCAGTCACGACAGTAAGCTCATTGATATTGTCCCCAGTTACGCCTGACACCCCCAACCAGAACACCTTGCAGAACGCACTGTTTTAACTCTAAAATGTTTTCTATCTTGAGTGTAAACAGACGTCCTTTTGCTTCTTCACTTCATTTCTGTTCTGTGTAATTCTGTTTCAATGTCAATGTttgatgcacattttatttgtattttttatgaacaTTACAAACTTGAACTACCTGGCCTAAGTTTTAAAATCCTTTCAGTATCGACACAGGAATCTTCCCGGGCACCAGAAATGGGTTTACACAGATGCCAAGGATTGGAAAAGAACCTCAGAAATGTATCTTCCTTACAGCAGGATAACGTGTGCACTTAGCAGAATGGTGAATGTTCAAGCATATCTTTAAATCGGCATTACACtacaacatatttatttgagtGTGTCTGGTAACGGTTTATCTTGGCTCTTCTCCCGCGCTGCTCTGTGGCTGGGATGCAAACACAGTGTCCACCTATACAGAGTTTCATAGGCGTCTGACAGAGTGAGGGCCCCAGCCACAAGCACTGCATCACAGCAGGGAGTGTTCGGACAAGGATGCATAATGCAGCTttctttgatgttattttttaaaactgacaaagtactttaacttttttttaatgattcttctataatataaatatatttaatctttatGTATCTGTCTTTTTCCAGTTTGGGCAGTTTTATTGCAATAAGGTATGAAAAAA
>TU83289
GGCGACAGACAGACGGGCAGTGACAGCACAGGCTCGCTTTCTTTCATTGCCTCTCCGATTGCAGTCAAAAACACCAGCTAGGTGTCATCTGCATcaatagatttatatatttagctgAATGCTATAAGCAAAAAGTGGTGATTCTGCATATAGGTGGACTGTGCACTAGGGGAGGCTGGGACCGCCATGCCGGAGCACAACGATGTGAGCCTCACCCCCGAGCAGCGGGTGCGCGCCCTCACCAAGATGGGCAGCTCGGTGGACGTCAACGAGGATGTGCCCCCCCGCCGCTACTTCCGCTCGGGCATGGAGATGATCCGCATGGCGACCGTGTACACGGAGGAGGGCAACACGGAGCGCGCCTTCATCCTCTACAACAAATTCATCACGCTCTTCATTGAGAAGCTTCCTAAACACCGGGATTACAAAACTGCCAATATCCCTGAAAAGAAGGAAACTATCAAGaagCTGAAAGATATCGCGTTCCCTCAAGCCGAGGAGCTGAAAAAGGACCTCTTGAAGAAGTATGAGAAGGAGTACCAGGAATTCCTTGTGAGGAAGAAAGCAGAGGAGGTGGCCCTGACCAAGGAGCTGACCAGACAGAAGGAGCTGGAGGCGGAGAGACAGAGGGTGGAGGAGCAGCGGCGGCGGCAGAAAGAGCAGGAGCAATTCAGCGCCTTCGAGGAGATGATCCGGCGCcaggagctggagaaggagaggcAGCGCATTTTGCAG

Function

GO: NA

KEGG:

id description
K11866 STAMBP, AMSH; STAM-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020922 True 2849 mRNA 0.49 10 37061595 37067805
TU83289 False 735 TUCP 0.55 5 37065163 37067792

Neighbor

gene id symbol gene type direction distance location
AMCG00020921 plpp5,LOC107553701,LOC107678050,LOC107720719 coding downstream 49360 37000425 ~ 37012235 (-)
AMCG00020924 NA coding downstream 62839 36974409 ~ 36998756 (-)
AMCG00020916 NA coding downstream 129967 36914487 ~ 36931628 (-)
AMCG00020918 NA coding downstream 148161 36909159 ~ 36913434 (-)
AMCG00020917 NA coding downstream 167468 36877475 ~ 36894127 (-)
AMCG00020920 NA coding upstream 1710 37069515 ~ 37074577 (-)
AMCG00020928 NA coding upstream 47738 37115543 ~ 37122859 (-)
AMCG00020927 NA coding upstream 80689 37148494 ~ 37155287 (-)
AMCG00020929 NA coding upstream 106035 37173840 ~ 37175240 (-)
AMCG00020932 NA coding upstream 173234 37241039 ~ 37282869 (-)
G66613 NA non-coding downstream 41799 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 191440 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 209959 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 313852 36747515 ~ 36747743 (-)
G66499 NA non-coding downstream 824668 36235772 ~ 36236927 (-)
G66685 NA non-coding upstream 199977 37267782 ~ 37268223 (-)
G66740 NA non-coding upstream 427318 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 668958 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 831662 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 1113232 38181037 ~ 38181274 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 15656 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 779066 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1074883 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1241765 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 1364626 35694968 ~ 35696969 (-)
AMCG00020943 NA other upstream 563972 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 1979899 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3489325 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 4528275 41596080 ~ 41602270 (-)

Expression


Co-expression Network