AMCG00020925


Basic Information

Item Value
gene id AMCG00020925
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37094286 ~ 37112090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020925
GCGCATTGATGCTATTGCGATCCACACCCTCTATTAAAACGCTGTACGTATCGTCTCTTGAGaaaagctgaaagtttggggaCCGGCCGGTTATTTCACGGCAGTCACCAGTGGAGGAAAGgcttggataaaaaaaaaagcatctgacatatgtatattatatgattatttaatGTAGAAATAATGGGACAATAAcgtttgttgtatttatttaatttgtattattaaaataaaatattgtgttgtggAATTACCGGGAAAGATGCAGTTGAGTTGCAGTTTGAggttgtgCCTTGCCTGTATCTGCTACATTTTGAGCGCTGCAGTGGTGAAAAACGAACCATTGGGCCCAGAAAGCAATCGGACGGCTCATCAGGTCTCATGTGCCTCAGGACAATACTGGCACAATGGCATTTGCTGTATAGAATGTGAAACTGGCTCGTATGCGAAGTCTCATTGCACTGAGAACGCAAAGCAAGGAGTCTGCGAGAAGTGCGTGGATGGAACGGATTATACGGAGCACCCGAATGGACTGGACAGGTGCTTTCAGTGCAAGCGCTGTCGTACAGATCAAGAGGAGGTGGTTCCCTGCACCAGAACTCATGCCAGCCAGTGTCAGTGCAGGACTGGTACCTTTTGCCACCACAATGAAGCCTGTGAGGTGTGCAAGAGGTGTAAAAAGTGTAAAGATGGCATGAAGGTGGTGCACAGCTGTAACGCCACCTCGGATGTCGTGTGTGAGAAGGACACTGCAGTCGACCCAGAGAACCCAAGCCGAGGTAACGCTGACCAAGACAAAAGCAGCGTAGGCCCAGgTGTTGCTATCGGCATTGGgtgttttgttcttgtgttGATTGGGATTGGGATTGGGATTTACTGGCggtggaagaagaaggaacCGGAGAGAGAAACTGCAGGTAACATCCAGCCTACTGAAGATGTGATTATACCAATCGAGACCGTGAATGGGGGGTCTGTGGAAGAGGAGCAGAACTCCCAGAATGCTGGGACGGAACAGCAGCGTAGAGCCAGCGAGGGAGAACCTTTGCTCAGACCCAAGACTCCTGGCGAAGAAGATGACGACGGAGGGCTGGGTAGGAGCCTCTCGAACACGGCCACCTCCTCGCAGGCCAGCCTGCCAGGCCTCAGCAGCACCCCTCGACCGAGTCCCGTGGCGCAGAGGGCCCAATGCTCTGGGattACGACACGGAAAAAACATCTCATTCCTTTAAATGGGCCAGATACACTTAATTCAGCCTTGCACCTGTTTTCTGGGAATGTGGAATGTAAAATTCATAAGAAGTTTCTGAGGAATATAGGTGTGACTGACAACGCCATAGAAAAGGCTAAAGTTGAACACCCAGAAGGGGTTGAAGAACAATTTTATCAGCTTCTACGAGTCTGGGTACAAGATAAGGGCCTGGACGCCTCTATTGACGACTTGCTGAAtgctttaattgatttaaatcacAAGCGGGACGCTGAAAATATTATGTATCAAGCcgttgaaaaaaaatattatcagCGTGCCGATGATTGATGGACTTGGAGTACTGGCTTCTCTGCCTTGGCCTTTTTGAAATGTTGCTTCAAAAACGATCGACTCCGAATGTGAGCCGCAGAGCAGACCCATCTTTCTCGTGTATCCTGCATCACTTGGTGGTTTTGTAAAGATGGGTCATCTGACTTACTGCCTTTCCTTTATGGATGAATTTGGAAGGGAAAATGAGacgttcatttaaaaaaaaagagaaaaaagtgcAGAATGTGTTCAAAAATGAACTGGATTGGCAAACGCACTTTCTTCCAGAACTGGAATTTCCCTGGAGGTCCTTGACGAAACGAAAGTACCTATTCACCTTCATCAAGAACAAAAGGTGATCTCTTCAGGGTGTGGTGCAGTTGCTTTGAATGAGTCACTGtacgtgtttatttttatttgtaacttCGAGAACTCATTCAGAACATGGGGACATGGATCTCTGATACAGGTGATGTCAGCGACTGACTACATTGTCTCATCACTTTGATTCTCAGGGAACCTCTGAATCCATTCCTTGTTGTCCAGATCCTGCAATACTGACTCATGGATGTGTACATTTGTGATTttctaaataaagtaaatatgcaACCATTTTGTAAGGTTCCTGTTGACAGTTGACTGctgtatttatatgtaataaAGTAAACCAGAGTAGTTGGCTAATTGTCTAAGGACATAGTTTGCATCATAGGAATGTACGAGTGCTACTGCAATTGTTCAGATCGCTCTATGACAGAAGCTTTGAGAATCCATATGAATGCCgccaatttgtttttcttgccagAGTTTGGGCTTCCATTGCCTttcagaaaaccaaaacaaatgtagatGCATATACAATTTGTGTACATGATTTTTAAAGCCAAATGGATTCTTAAGCATCTTTAGGTGCCTTGAAACTTTTTCTAACTGCATCAAATGTTTACAATCCATTCAATGCTTTCGAGGCGTCGGTCAGCTCTCGTTGTTTTAAGTGTTCTGGTCCTGTCAGTGTGAATGAACCAGGGCCAGCAGTGAGATGTGATGCTTACACCAGATGGTGTAGGTTAACTGGAAAAGTGAAACCTTGCTATCTCCCAAAGGATTTCTTTTTCTAGCAGGGCATTCTAGACTAATCTTGTGCACATTGGTAGGTTTGCCTTGCGCACCGTGGGTTACATTCAGAGGTTACCCACATAATTGAAACTTCAACAGAAAGTTTATGCTCTCTGGAAGAGCCATGTGCGGGCTGGGTTTGAGAGCTGAGTGTACCACAGTTTCTCCCAGAGTTGCTCAGCATCTGCCTCTTCACAGATTAAGCAAAAGTGAAAACATAGGACCATGTAATTCAGATGCTTTTACAAGCCACAGTCCTCTGCACCTTCTTATGGAGAGCCTTTAACTCCCTTGACATGTTACTGAATGATTCCTTGTTTCTAGGTGAAAAAGTAATCTGGGTTTAAGAAGGATAAATGCACATCCTGAAAAAGTTACTTGGAGCAAGTTTATTGGAGAAGCAGTCGTATACTCTGACTTAAAAGGGATAGTGTTGACAAATTGCAAGTAAATCTAATGAAACCAAAATGCAGTGGCAGTTTGTCCAGAAAGGGACCATGCTCCACCTAGTGGATATAATGGGATTTGTTGAAATTGTAATGCACTGCAGAACTGATTGATTTGCTATACAgtccatgaaatatatatttatttttattcatggaATGTGTTCAGTTTACCCTTGCTCTATAACTTAATTTTTttagttatatattatttatgctGTCTTAGGTCCTGCAGAGAATGCAACACTACCTTGGATCAGGACTGAGGTCTTGATTACTTTTCAGaagttttgagtttttatttgtatatgttccGTCTTaaatttttaaagcttttttgtAACGTATTTTCTACTCGCTGTATGAATGATTCTGTTTTGcactgtacaaaaaacaaaaaacacccccccaaaaaataattgGTTGTAAATTATTGGTATAACAGAAAGGGTAACTGGATTTAACCCCTTCTCCAAACTGTGAAGTATTTAATGACTTTATTTACcctgtaaattatgtttattatggagtttgttgaacatttaaagtttaatttatgtttagaAATTTCACCTTTTAAgaatatagtattttttaaatccagctttgaaataaaaattactTTTACTGCT

Function

GO: NA

KEGG:

id description
K04722 TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020925 True 3716 mRNA 0.42 10 37094286 37112090

Neighbor

gene id symbol gene type direction distance location
AMCG00020919 NA coding upstream 36250 37047642 ~ 37058036 (+)
AMCG00020914 NA coding upstream 224708 36851495 ~ 36869578 (+)
AMCG00020909 mak16 coding upstream 853066 36234933 ~ 36241220 (+)
AMCG00020910 rnf122 coding upstream 867937 36205330 ~ 36226349 (+)
AMCG00020908 NA coding upstream 890426 36196447 ~ 36203860 (+)
AMCG00020926 NA coding downstream 46562 37158652 ~ 37165302 (+)
AMCG00020930 LOC106580522,LOC104937675,LOC107673422 coding downstream 71574 37183664 ~ 37185928 (+)
AMCG00020931 loxl2,LOC106580522 coding downstream 91898 37203988 ~ 37226869 (+)
AMCG00020941 NA coding downstream 517234 37629324 ~ 37630094 (+)
AMCG00020945 antxr1,LOC108236442,LOC103362313 coding downstream 557872 37669962 ~ 37685496 (+)
G66602 NA non-coding upstream 19652 37073679 ~ 37074634 (+)
G66528 NA non-coding upstream 287709 36806320 ~ 36806577 (+)
G66524 NA non-coding upstream 369157 36724894 ~ 36725129 (+)
G66395 NA non-coding upstream 1019865 36004619 ~ 36074421 (+)
G66342 NA non-coding upstream 1237258 35798710 ~ 35857028 (+)
G66696 NA non-coding downstream 176424 37288514 ~ 37288841 (+)
G66700 NA non-coding downstream 189158 37301248 ~ 37301598 (+)
G66701 NA non-coding downstream 191959 37304049 ~ 37309335 (+)
G66739 NA non-coding downstream 383031 37495121 ~ 37495381 (+)
G66780 NA non-coding downstream 538339 37650429 ~ 37650698 (+)
G66551 NA other upstream 176850 36914815 ~ 36917436 (+)
G66506 NA other upstream 837775 36254699 ~ 36256511 (+)
G66362 NA other upstream 1185884 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 1343840 35747156 ~ 35750446 (+)
G66149 NA other upstream 1929301 35163813 ~ 35164985 (+)
AMCG00020942 NA other downstream 454946 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 1004972 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 3209023 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 3443876 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 3939382 41051472 ~ 41062527 (+)

Expression


Co-expression Network