AMCG00020927


Basic Information

Item Value
gene id AMCG00020927
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37148494 ~ 37155287 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020927
ATTTCCGCTGCGGGGAGAGAGATGCCTTCCTATCCATTGTCCACTTCACAGTCGTTTCAATAAGGACGTTTTGATTCATCACATAATTCACCACACGGTCTGGCAATAGAAGAAAACTACAGGCAGTTGCATAATCCAAAACAATCCTTGCAGTCCTCTAGCCTAAACATGCTCTATCCTGCCAAAGAGACCAGCGGAAGCATTAAGGAGCTACTGAAGGCTTTTGGAGGAGAGCTGAGCCAAATTAATCAGGAGAAAGATGGCATTTCTCTCTTGGAGCATCCTGAGGCACCATCAGGATCTTTCCCGCGGCACACCTCCAAGCAGGGCTTTAGCGTAACTGTCGAAGAACAGCTTTCAGCATACCAGCGCTCTTTCCTGAAGGGTTTGGATCTGGAAGCTTTTTCGGCAGAGGTCTTTGACCCCAGGGGAATATCGACTACCTTGGAATGTCGGGATGGTCACTTGGTGTTAACCGGGAACCCTCTGGAGGTACCCACAAGAGCAGTGGAGGTCCTGAAGCACATTGTCAAGGAAAAGGCCATCCGCAACAATGGGTCCAATCAGGCAGCCACCAAAGGCAGGGAGTGGAAGGACCTTTTGCAAAAGGTCAAAAAAGAATTCAATGCAGACAGGAAGAAGGTGCAAACCTACATCTCGGGAAACCAGGATGACAGCAACTTCATGGTGGTGCTGGTGGGATTTGATGAGGTGCAAATCACCAATAGCATGATCCGAGACTATTTACATAAGAAAACTCGCGCCAAGAGGACCTTGGAGTTCAGGCAGACACATTTAGTGGAAGCAGGAACTGGCCTTCTGCATGTCCTGGACTGGGACACCTCATCTGGAGTTAGGGTGATCGTGCAGGTTGTTGGGCCGTCAAAGTTGGAAGTGATATTGGTTGGCACACGAGAGGACATACAGAGAGCTCAGGAGCTGATTAAAACTTGTCTGAAGTCCCTGGTTAAAAAGTCAATAATTCTGGAAGAGCCTTGGACCAAAGAGTACTTTGgagatcagaaaacaaaacgtGCCTTAGAAGAGTATTGCAAAACCTACAGATGTCACATTACTCTGACTATCAAAAATGCCGGTGAGATCCAAGTGACTGGACGGCCATCAGATGTGGAGAAAGCTCTCACTGCTATCAGCCATGGCTTCCATAGTGCCAAAGtccaaaagtgtgtgtgtgaccccCAGATTGCCCTGCTGAGCCTTAAGCAGCTTGCTTCAATCCAGAAAGACCTGAATCTCAGGCTTACACACAATGCACAGACTGTCACAATTGAGGGACTGCCAAGAGAGGTGCAGAAGGCTCAAAAACACACCTTCAGAAGTTTGTGGACTGCCAGTCGTCAGTTCGTCTGTCCTGAGCCAGGCTGCAGCCGCTCCTTCGACTCCCAGAGAGGGCTGAGTCTGCACCATACCCTGATTCACACGGCAGAAGGAAGAGCGACCTGCCCGAAGTGCGGCAAGGAAAGCACTAAAACTCCTCAGGTTTTTCAGCCCAAACCCTGGACTCCAAGCTCTTCATTCACCTGTGGTACCTGTAGCCGATCCTTTGATTCCCAGCGTGGCCTTAGTCTGCACTTCACACTGATGCACACCGCAGCAGGACGAGCTACCTGTCCAAGTTGCGGCAAGGAAAGCACCAAGAGTGGGATCACCAGGCACAAGTGCAAGGGCTGGTAAGAGTTCTGGTGGGCAACGCCTGCCAATCACTGACCACCTTTGGAATGGGCAATCGACCGACATCTGCACCATTATACTGGACAACAAACAGAACTTCTTAAACACACAGTGCAAAAATCATCTTGTACTGCAATGCAGTAGCACAATACAATGGTACCTGCAAGTTgccctggatcagggcatctgccataaataaataaataaataaataaataaaaataataatagaacaaGGGTTCAGAATAAGCTGAAGTTATGTCAGTTTTGCATTCCACGACATTCCAAACTGCAAAGTAcgattttgtatattttttatatataaaacaataggttgcgtatgcataGATGGTGGATGTGTATGCATGGAGGGTGGAAggtactatttgtactaccagccaGCTGAAAAacgcaatttctgttttttattcacaaacacagaggctcTCATCTGTCTTGAcgaaccaaggcgaagggcaaaaagaggaagtctttgtgcagaaattaccatttaaacaaacaggaagtggaagggtcctatttgagtgacgggcacaagggccaatggcagctttgatagacgaATGTCTTCGATAAGTTTCAGCAATGCacactgaaaacccctcccccttggacagtgcttctaactcgaaagataactataaacttattttttatattggatTTTGTAAGAAAATTATAGCCTACTGTTAATCAAATAGTACAATTATACAGTTTTTTGTAGAAGGTTAAAGGAAACAGGGAGCGGGGTGATGGTGCAATGGTGAAGATTTATTTATAGAGCTtgagtgaaagaaaacaaaactaaaataaaaccctaGCTCCTTGGTGATTCTAACAACACTGTGAAAACAGATCCCTCTCTAAATATGAACAGCTaagcaaaacatacaaaagacgAACAGCCAACAAGTCCAAATCGCAAATCCAAAAGTCCATAAATCAAGGTCAATTACCAAGTCTTTTCAGTTACAGTTCAGTTACAGTTCGGTTATAGTTCTTCTTAATCTCTCTCCTTCACACCAGAACAAAGGGTACTTTTATGCAGGAACCCGGACAATCAGGGAAGTCCTGTGTTTCAGGTGCTTTCATAGCATTATTCATCCTCCAAGGGCTTCCACACACAGTGATGTTGAAACAGTGTCTGTAACCTGTTATGTACATTGACAATTAATAACAGGTCTAATAGTTTTATTTAGGAATTCTAGTATACACTTTAGTTCTGCTTTTTCTCATCTGAACACAATGGAGTCAAGTAAATAGACTGTTAGGAGAAAAGGCACATAAAGGCACAAACATTACAGTTTAGTACTGTAGAGTGGAGAGGTTTAGCCTAAATGCCATAAAGAGTGAAGAAGCAAatccacaataaaaacatttgttgtaGAACTACAGGATGGGACAGTGTGGAACCACGTAATATTGGCTGGTAGGACCTCTGGTCAAGGGAGCAGAGCTGAATTAATTTCCTCATCAGATCATTGTATGACATGCTCCCATCACCACAGAACCTAAACCTCTGGATCTCAGAGGATGTGTTGTGTCCTCTGTGTTCATTGACCGGATGTAAAGTGGCTCTTTACAAGGACAGTTTACTTGGCGTCATGACCAAGTACTACGATGTTGGGCCCTAGCAATGGCAAGAAAGCATAACATGGTCAATAAGTTTCCACTGGTCCAGCTCCAGCAGCAACTGGCTGTGGTTCAGATGAAAAGATTCTTGTTGTGTAGATTTCCATGTTAGTTTTACTTTTAGGTGGTTATAATGCCCTCCAAAGGAATCTAACCTGTTCACAGCACAACACCTCTTGTATAATCCAATGCCTTTTGAGTTAGACTTGCCCCATTGTTTAGTTGGGTTGTATTTTTCTGAACTTGCCATGTATTGTCATACTATTCAGCTCTCTCAGGTCTTTTCAatcatcaatcaatcagtcattttttattgtataacGTCCAGAGGGGTCATGCAGCTAAATGTGTTGGGGGGGCACGGTCGGAAAACTAATTTTGATTGTTACAAATTGTTggtatttaatgctttaaacTACATCTATACAGTATCCTAAGTCATTGTAagtgtactgtaatgtactgcTCTACACACATATTCAATAGTGTTGCTGTATTCTCGGCACTGGTATTTCTGAAACCAGTTCACATCTTTGTGTGGTTCCAAATGAAGTGTAAGGGTCAGCATCTCACACTGGTGGAGTGGGACCCATTCTTATATATTCATCTTTTGCCAGTCGATCTTTTGGCATAAACTTGTCTCCGTttctgattattaaaaaaaagtccttcAAAATTGTGTGCATACTGTATTAACTAT

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020927 True 4045 mRNA 0.43 6 37148494 37155287

Neighbor

gene id symbol gene type direction distance location
AMCG00020928 NA coding downstream 25635 37115543 ~ 37122859 (-)
AMCG00020920 NA coding downstream 73917 37069515 ~ 37074577 (-)
AMCG00020921 plpp5,LOC107553701,LOC107678050,LOC107720719 coding downstream 136259 37000425 ~ 37012235 (-)
AMCG00020924 NA coding downstream 149738 36974409 ~ 36998756 (-)
AMCG00020916 NA coding downstream 216866 36914487 ~ 36931628 (-)
AMCG00020929 NA coding upstream 18553 37173840 ~ 37175240 (-)
AMCG00020932 NA coding upstream 85752 37241039 ~ 37282869 (-)
AMCG00020933 entpd4 coding upstream 148678 37303965 ~ 37323700 (-)
AMCG00020935 NA coding upstream 169927 37325214 ~ 37337254 (-)
AMCG00020934 lgi3,LOC106579864 coding upstream 182624 37337911 ~ 37356170 (-)
G66613 NA non-coding downstream 128698 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 278339 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 296858 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 400751 36747515 ~ 36747743 (-)
G66499 NA non-coding downstream 911567 36235772 ~ 36236927 (-)
G66685 NA non-coding upstream 112495 37267782 ~ 37268223 (-)
G66740 NA non-coding upstream 339836 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 581476 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 744180 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 1025750 38181037 ~ 38181274 (-)
AMCG00020922 NA other downstream 80689 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 102555 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 865965 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1161782 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1328664 35813873 ~ 35819830 (-)
AMCG00020943 NA other upstream 476490 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 1892417 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3401843 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 4440793 41596080 ~ 41602270 (-)

Expression


Co-expression Network