AMCG00020934 (lgi3,LOC106579864)


Basic Information

Item Value
gene id AMCG00020934
gene name lgi3,LOC106579864
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37337911 ~ 37356170 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020934
gctctctctccctctctctgtcgctctccatctctctctctgttttgttcCCATCCTTTGCTCTGGAACACAGACACAACGCAAGGCAGCTGAGCTAAACTGTGATCtattctatctctctctgttgctctctctctctcgctctctctctgcaagAAGCATCGTGCAGCAGACTCCGGCtctcctttttttctctctccccacaaACTCTGACCCCtgccttctcctcctcctcctcctcctccccttcctcctcccccccaaGTCCTCCTGAGGAGACCATGCTGCCAGGTGGGGGTCTGCGATGGGAGTCGGGGTGGCGATGGATGCCCCTCTTGGCCACCCTGTGCCTGCTCTGCCTGGCGGGATGCGCAGGGGCCCGGAGAGCCCCCAAGATCCCCCGCTGTCCTGCTACCTGCTCCTGCACCAAAGACAGCGCCTTCTGTGTGGACACCAAGGCCATCCCCAAGAGCTTTCCTCCTGGAATCATCTCTCTGACAATGGTGAACGCAGCCTTCACTGAGATCCCAGAGGGAGCGTTCTCCCACCTGCACCTGCTGCAGTTCCTCCTGCTCAACTCCAACACTTTCTCGCTCATTGCCGACGATGCCTTTGCTGGCCTCCCCCACCTGCAGTACCTATCCCTGGCCAATAACAACTTGCAAATCCTTCCTCGAGAACTATTCAAACACCTGGATATCTTGACTGACCTaGACCTGAGAGGAAACTCATTCCGCTGTGACTGCAAAATCAAATGGCTAGTGGACTGGCTAGAGAAGACCAACACATCAGTGCCAGCCATCTATTGCATCAGCCCCATTGAGTACCAGGGCCGTCGCATCTCTGACCTCACCCCCCGAGACTTCAATTGTATCACCGCAGGTCTGCTATGGAAGTTGGGTGGAGTGGATTTTGCCGTGTATGAGACTTTCCCCTTCCAGTCAGTGTCAGTGGAGTCATTTGACTTCGCCGGGGATCAGTTTGTTGTGTTTGCACAGCCCGACACAGGCAACTGCACCCTGTATGTGTGGGACCATGTGGAGATGGTCTTCAGGAAGTTCTACAACATCACCTCTCACTCTGCGGTGTTCTGCAAGCCTGTGGTGATTGACAACAATCTCTACATAGTGGTGGCCCAGCTCTTTGGAGGTTCCCACATCTACAAGTGGGAGGAGGACCCTCAGAGGTTTGTGAAGATCCAGGATATTGACACCACCCGCGTCCGCAAGCCCAACTCAGTGGAGTCCTTCCAGCTGGAGGGGGACTGGTATTTTGCGGTGGCGGACAGCTCCAAGGCGGGTTCCACCAGTCTGTATCGCTGGAATAGCAATGGCTTCTACTCCCACCAGTCCCTGCATCCCTGGCACAGAGACACCCACGCCGAGTTCCTAGAGGTGGATGGCAAGCCCCGGCTCATCCTGTCTAGCAGTTCCCAGCCACCTGTGGTGTATCAGTGGAACCGCGCCCAGCGCCAGTTTGCTTTCCACTCCCAGATCCCCAGCGCCGCAGATGTGCAGATGGTCCGGCACTTCCGCGTGCGCAAGGATCTGTACCTGTGCCTGACTCGCTTCATTGGCGACTCCAAGGTCCTGCGCTGGGAAGGCCAACGCTTCGTGGAGATCCAGACCCTGCCCTCACGTGGCTCCATGGTAGTGTACCCTTTCTCTGTGGGCCCCCGCCAGTACATGGTCCTGGGCAGCGACTTCTCCTTCTCCCGAGTCTACCTGTGGGATGCCCTGACCCAGAGGTTCCAGCCCTTCCAGGAGCTGAATGTGCGTGCCCCCCGAGCCTTCAGCCTGGTCTCTATCGACAACAAGGACATCCTGCTGGCCGCTAGCTTCAAAGGCAATACGTTGGCATACCAACATCTAGTGGTGGACCTGAGCGCCAAGTAAATCCAGCAAGAGGTGAAGCAACTTGACAGCTGATGGGGCTAAAGATGGGGTTTTGGGGTTTAGGGTCTTATATGTAATCTAAACACAAATCTGATCAATCCTGTTAGTTCATGACTTAGGCCCAAACCAATAAAAACCATGAACCTTTGGCCACCTACAAATTCCAGCTCCATTACTTCATGTCAGTTCTTGTATGACCCAGAGTTCTTCCCTCTACTAAAAACCTGCCAATGATTCttagttttttcatttatgaTTGGTGGGTGTTTTGATTTTACCTGTGTCTTGGTTAACTTTGCTCCAACACGTGTTTAAAATTCAGGTTAATTGATTGATGATGTCAAATAAGTCTTTACTAGTGCATTTTCTAcccccttttttaaataaagtgttaagTCTTCGAGCTTTAAACTGATTCTCAGAAATATGAACCCGTTAGATTTGGTCTTGCAGCCTCTAACCAAGTCAAATTTTTCAGTGCTGAATACAGATAGGGATTGGAATTactaaatatgtaaacatttcaattatgtGTGTTGTGTAACTGAAGTAGTGATGTATTCAGAATCTGGTGAATATTTCGGATCCACTACCCCATGTGCATATGAATGAATATACACCACAGaacattattgtattaatgttaCAGCATGTAAAAATCTTCTAAAGTGCCAAATGAGCTTTTCCACAAGGTGCAGAATTAAAATCTTGGTCTGTAAGATAATATAGCAAATAGctattgcaaaatatatatttttttggaatGTGATAAGAATATGTATGATATTATATGTAGTATTTATTCCTATGGCTGTAATTACTAGCCATTAACTTGAGTATAGTGTTTGACACCAATAATCCACTTTGTAGGAGAGATTGTCTCACATGTATCTGCTATTGTCACATATAACTATAAAACGTTATAGTTATTTGAACGATATTGTCTCTGTGATCAAGAATATAAATAACCAAGAATCAAAGCCCCAAATATGACACAGTTAATAAAACAAGATGAGTGCATGGTTTACTAATTTACTAAGTATTACTAATCACAGTCACTCATTTACAAAGTGTGTGCATGAATTAATAAACCATGAGCATACATTTGTCTCATGTTTTAGTTTCAGCTTTAATATTTGTTGGGGCTCCATAACAAAGAATATGTCTTTTAGGAGATCATTCTCCTTCATTTAATACCTGTTACATTTACTTACACAGATTTATAACTTATGTaagttactttttaaattaacttcaaTAATTCTTTTCATCTTACTTATACTTATTGGAAGCACTTCCCAAAAAGCCTTGTGtgcagcaaataaaataaaatcccagtctcaattatttttattttactgttcctaaatgtattaacattttaaactaaattgtaatgtattcatctattaaacaaagtaataatgGTGAGGGGGTGGCATGGTGGCGCAGTGGTTTGCGCTGCTGCATCACAGCCCCTGGTACCCAGGAGTAAGGCCTCGGGGGtttgcctgtgtggagtttgttctCCCTGTATCTTCTCCCTGTATCTTGCTCCGGATTCCTCCCATTTCCCAAAGACTGGAtgattggctactctaaattgccctgtagtgtgtgtgtgtatatgtgtgctATCCtgcgatggactggcatccgGTTCAGGTTGTGCCCTGCTGGTGGGAATTCCGGTTTACCACGACTCCATACTGCAGGCAGCGGTTATTGagaatatattaatgaataaagCAGAGAGATAGGGGAGAACACATGTTTAACTCTAACCATTATAAATCTTACATAGCAAAGGGAATGATGCACtttgaaataatcaaaaacaattgCCAAAACACGCatgaaaaattgtattattatccgcattattttaaacattaatagaCTGTTATAAGCAGGAGCAGTAGTACATTGACTACGGCCCTGTACAAATGTCAAACTAACACTTgagcactttatttaattttactcaGTATAGTCTGGACAGCATGTTTTAAGATATGAATAGTTGTCATTACATGCAAAGccctgttttaaaaatataataagaaaattatctttaaaaaaaactgctacTGCACATTACAtgtaaaactgcaaaatgtagATAAATTCATTGTGAAAGCAGAAGTGCTTCAGAATCCATGATACCTGtgaaaaaacattatacatctTTACTGTGGCCTGTGAATGTGTCTGTGGCTGTCTTTGGAGTTGTGGATCAGAGATTCCTTCCCAGTCTAATCCAAACAAAATCCGTGATCTTGCGAATCTTTTCCGGTTCTGTAAGGTGGCATTGCTTCACTGGTGTGTTTTCAGGGGTGTTAATTTTGACACAGTGGGCAGTGAGAGAAAGGCAGGCAAATCTGCAAGTCACTTTAGCATAcagggatttatttatgtatttatttattaatcattaaatctTCAGAACAAAAGACAGATGCTACATCATCCTAATGTTGGTATGATTATCATTTAATGAAATCAGTTCAGTTGACATTGAAGGTACgagttattaaaaaaacaactacagctCTACACTATTGAAGGCAGGGAGCtggtttgtttcagtttagctgtgtgtttgcaTTCGTTGTTCATCCACTAAAGGCAAATGAATCTGAGTCATGggcagttttctgttttaatttttctcagGGTTCACGGGTCATGTATTAGAGGGATCTCTACAAAACTTCAGGCCTCAAGATATCAATCTATGCTTAACTAAACCACACAAGTAAGCTGTGAGAATAAAGAGCCAGTGCAATAAAGGAAGAACCTCTGTCTCACACATTCTCTCACTCACTCCCAATAATGATGTATGTGAACATgtgcaataaattaatatagCTTTCACAAGTGGGTCATGTTGTTCTATAGCTGTTCTATAGCCATAGtgttttaaatttaagtaaTGGTCcgaggggaaaaacaacaacagacataTTTTATGCATTAACTGTTTGCCAAGCTTGCAATTTGACTCAACGGgagctacaaaaacaaaaaaagattcaaGTTAAagctttctaaaaataaaaagcataataaaataaaaaaattacttttggGAAAGGAAATGCCTGTGTTTTTGATTGCCATATCTGACTCCAGTTTGTGTATATTCTCTGTGTGCTTTGATGTGAACAACGTGACGCCTCAATATACCTAGCATGCGGTGAGAGGTAGAGACAAGTAGGCCAAGTGACtgtttaaaaccaaataaagcCAAGGCAGAGattcagagagagaaaatgtcagAGGAGATGCTAATACTTCTGCAGcttattgtgatatttttacagaaagtataattttacCATGGGGGTcttaactataaaataattcacagtaacagtatataaattattaaagtaCATACAGTGCTGTAGTGTTTAATACTATGGTCTGAATTGTTTACAGTAGTTGttactagttttttttttaaatgtactattagtaagtaaattaaaactaatcTTTTAGGACAAAGATGGTGAAATCAGTACACTTACTATCATTTTTAGACTGCAATATGTACTATAAGTTAAGGGGTTTTGCAGATAGTATAGCTttaatgctgtatttgtttttcctgcatttGTTCTCTTTTTGTGAATTTGTGTACAGTCTGTGCTTGAACGACACAAATATAATGTAGGCTAGACAGCTGACCTTTCCCCTTGCCCCATGTTAAAATGCTTGATTTGCAGTTGTTGTCTCTGTGGAGGGAAAAGTCACTGGTCCctctaaaaacacaaacaaatgaattaGTTTGTCTCTTAGGTCATAGTTATTCCaagtaaatgtaattgttctgaTTTGAATGTATACATGTGTGAATATTCTGCTCTGGACTATAGATTGTTTAGGATAGTATTTGAATAGACATAATTAGTTtgttcacacaaaaacaacctgTTGTCACTGCTTGTGCTTTCTGATGTGCAACTTGAAAAGTATATCTCTTTATTGCCATGGTGAGTGGTTAATAAAAATATGCTGTAAACATGCTA

Function

symbol description
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).

NR:

description
PREDICTED: leucine-rich repeat LGI family member 3

GO: NA

KEGG:

id description
K19999 LGI3; leucine-rich repeat LGI family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020934 True 5932 mRNA 0.42 8 37337911 37356170

Neighbor

gene id symbol gene type direction distance location
AMCG00020935 NA coding downstream 657 37325214 ~ 37337254 (-)
AMCG00020933 entpd4 coding downstream 14211 37303965 ~ 37323700 (-)
AMCG00020932 NA coding downstream 55042 37241039 ~ 37282869 (-)
AMCG00020929 NA coding downstream 162671 37173840 ~ 37175240 (-)
AMCG00020927 NA coding downstream 182624 37148494 ~ 37155287 (-)
AMCG00020936 LOC106579865,LOC105014025 coding upstream 42129 37398299 ~ 37454868 (-)
AMCG00020937 NA coding upstream 168535 37524705 ~ 37527768 (-)
AMCG00020939 kctd9,LOC101468158,LOC102794741 coding upstream 178585 37534755 ~ 37539399 (-)
AMCG00020938 acty,actr1,LOC106585571,LOC105889177,LOC108425179 coding upstream 189454 37545624 ~ 37549905 (-)
AMCG00020940 NA coding upstream 200410 37556580 ~ 37566120 (-)
G66685 NA non-coding downstream 69688 37267782 ~ 37268223 (-)
G66613 NA non-coding downstream 318115 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 467756 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 486275 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 590168 36747515 ~ 36747743 (-)
G66740 NA non-coding upstream 138953 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 380593 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 543297 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 824867 38181037 ~ 38181274 (-)
G66872 NA non-coding upstream 921824 38277994 ~ 38278539 (-)
AMCG00020922 NA other downstream 270106 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 291972 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1055382 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1351199 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1518081 35813873 ~ 35819830 (-)
AMCG00020943 NA other upstream 275607 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 1691534 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3200960 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 4239910 41596080 ~ 41602270 (-)

Expression


Co-expression Network