AMCG00020935


Basic Information

Item Value
gene id AMCG00020935
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37325214 ~ 37337254 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020935
CCGGGGTTAAAGTTTGTCTCTTCCAAGCTGCACTGTTACGaagatgttgttgttgtttttttcgttGTTTTTAACAAGGCCAATTAAAGATGTATAGAAAGATGCAATGGTGACAACATTCAAGTATTCAGGCTTCAAAGGAGAAATGACTTGCTAAGTAGGAGCAGAAATATACAGTTGCTAATGGGAGATATGTCGAGTCCCctgccaaaacaacaacaacatgaaaccTACGACGAGTTTCCCCCAGAGTGGGCGGACGACGAGCGCATGTGCTTCTTGTTTTCGGCATTTAAACACAACCGCGAAGTCAATTGCACAGACTGGGACAGCAAGATGGACTTCTGGGGCCCGTTGATCGTCCGCACCTGCCGGCAGCGTGGTGCCGTTTGCGTCACCTTGCAGGAGCTCAACCAGATCTTCCACAGAAAGGGCAGTTTCCCTCTGGGTCTTGGCACCGTTATTCAGGGCATGGTCAGGCACGGGAGGCTGCAGAAGGAGTCAGAGTTTGCGGCGAACGTGGACTCGGGCTGGCTGTCCTGGGGGGTGGGGCTGCTCCTGGTCAGACCTCTAAAATGGACCCTCTCCACCCTGCTGGGCACAAGCCGTGTACCACTGGAGGAGTCCTACGTGGTGATTGAGCTCGTTAAGgagaagGCCACAGAGCTGCTGCGTGTTTACCGGAGCTCCCCGATAGCTGACCGCGCCCTGCTGTCCTTCCAGGAGCTGAGGACAATGGCTGCCCACATCTGCCCAGATGAGACCACGCTGTGCCTGGCGCTGCTgcaactgcagagagagaagcatGTGACCGTGTCGCTGCACGAGGGGGAGAAGATTGTGAAGTTCTCCCAGCCTGGCCAAGGGCGGGTGCCTCCCGTCAGCGATGTGGACCTGGGCATATATCAGCTCCAGCGAAGTGAGAGGCTGCTGGGAGAGAGGGTGGAGGCATTGGGGGAGGAAGCCGACAGGTGCAGAGAGGAGGCCAGGACACTACTGCGCGAGGGGAAGAAGACCCAGGCCCTGCGGTGTCTGCGGGGGAGGAAGCGTGTGGAGAAGCGGGCAGACCGGCTGCATGCCCAGCTGGAGACAGTGAAAGGCATTCTGGACAGGATtgctcactcacacactgaccgCCTGCTCTGTGATAATCAGGATGAAGTTAACCAGACTCTGTCGGGAGCAGCGCTTGATGCCTCGGATGATCTAGAGGAGGAGCTCAAGACCCTATTGGAGGAATCTGATCCTGATGGCCCTCACACTCTCCCAGAGGTCCCCACTAAGCCCCTCACCCCAGGTATGGCTCCAGGTCGCTCCTCAGAGAGCTTCCTGGCCTCCCTGCCAGATGTACCCACTTCCGAGGTGAACATCACAGACGAGGAGCTGGACAGAGAGCTGAGCAGACTGACCCTCGCAGATACAGTGGCTCAGAAACCACTGAAGAGACCCGAGCCAGCGCTGTGAGGGGTGAAGCACATGTCCCATTCAATATGGGTCTGCACAGAGAATGTCCGGGCAGTCTCTCGTCTGGATCTCCTTGTAAAAGCAATCAGTACAAACTATTATGTGTCTTTTGGAACAGGAGTacctttctgttttgtaatggttgttgtttcttttgtttttatctttaagAGGCCTTTACTTTTCAAATTGTGATCTGCTTTCGCTGTAATGAAAAGATATATGAAAAGACATTATATTCTGTACAAAATAACATGATGATGCCAAACAATAGATCGGACTGCCTCAGCTTTTTATTGACCGCTGCTTCTAATCCTTTTCAGCAACAATATCCTAAATTCCTAATTTTgcctgcaattttttttttttttttaataaaagttaaagAGCCTTATTGGTTAAACAAGgttaagaaaatacatcaaagaGAAAGGGTTTGAAGACTCCCTAGTGGCCCATCCAGTTAAAGCCCCTACCCAGAGTGTAGTGCGAGTCCTGCAGCCTGAAGATCgtaactttatatatttatatcccaAGATGCTTGTCTGGAAAATGTATCCACTTACAGTGCAGAGAGCACTTGATTGTTCTAATCTGTGCCATGTGACTGTGGACTCTGGGTTGTCCGATGCATTACTGTCTGAGCACTAGTAATGTTGGATGGGCTCTAAGTTGGCCAAGCTTTCCATGGTTCATTTGCAACTCTTTGGGACTGCCTGTACACCTGTGAGTTTGTCAAGAAGCAGATTCTGAAAAGAAGCATGTGTGTTGTCTATATCTCCCCAGTGCTGGTCCCGATGCTGAAACTGTGGCCCTAATTGGGAACAACATGTAAGGGGGGCTTGTACTTATCTCCCAATATAACATGGCAgcactatttttttaaactagtgAAGAGCAGTCCTGGAAAAAAGAGCAAATCTCAGGGTTCCAAAAGATAAATTGTTATTCATAACCATTCATAACGAAATCTGCCTTGATGGTTTTGTCATtcttaacatgttttattcCATTTTCAGCTTGTAACAGACCTGACATTTGAAGTCACTGCTAAAGGCACTgctcgccctggacaagggtgtctgctaagaaataaataatacaaataataataaataattaacacagtGGTAGTAATAATAAGTTCAATATGCTAAATTGCAACAGCTTTGATATCAAGTACTGCTGGTCCAAAAATACAGCATTAGCTCATGTATTGACCACACTGCGATGAGCGAGATTCTCTAAAAGATTCATTATCGCTATAAACTGTAACAACATAGTGGctctttaatgtaaatatataatgaattctCTCAATTGCTAATTctctgtatattatattttctaacaagTATAAGTcatgaataaacaaaaccctaagaaattgtgatattttcattgagagtttttttttatggtataGTTATCTTAAACTGTGACAATTAAGGAATGAAGCAGATAACTCTCTTACTATTATTTCTGATTCTTTAGCAAAATGCAATGCAGAGTAATCTATGCAAGCCAGCATGCACACAATCCCTGGTGAATATTTTCAGTCTTTAGTTACGCGTTTCCACAGGGTATGATACCAATACTGTGTGATCATGGTAACCTTTTTCATAATAAAGTTTTTAGAATAGGTAATTTAGCATCATTTTCACTGAATGGGAGAAACTACAGTTTCCACCTAAATACAGTGTTAAGCTATTACAGTGCTTTCTTTCCTCAGCAAGGTATGGCTGAACCTCTCACTGTCTTTGCTATACTTTAGTTCAACCCTGCTATTTGATCTTTtaagagattattattaataataataataataataacaataatattaatattttctttcaaatacatatGATATATACA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0045324 late endosome to vacuole transport biological_process
GO:0000815 ESCRT III complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15053 CHMP7; charged multivesicular body protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020935 True 3339 mRNA 0.45 10 37325214 37337254

Neighbor

gene id symbol gene type direction distance location
AMCG00020933 entpd4 coding downstream 1514 37303965 ~ 37323700 (-)
AMCG00020932 NA coding downstream 42345 37241039 ~ 37282869 (-)
AMCG00020929 NA coding downstream 149974 37173840 ~ 37175240 (-)
AMCG00020927 NA coding downstream 169927 37148494 ~ 37155287 (-)
AMCG00020928 NA coding downstream 202355 37115543 ~ 37122859 (-)
AMCG00020934 lgi3,LOC106579864 coding upstream 657 37337911 ~ 37356170 (-)
AMCG00020936 LOC106579865,LOC105014025 coding upstream 61045 37398299 ~ 37454868 (-)
AMCG00020937 NA coding upstream 187451 37524705 ~ 37527768 (-)
AMCG00020939 kctd9,LOC101468158,LOC102794741 coding upstream 197501 37534755 ~ 37539399 (-)
AMCG00020938 acty,actr1,LOC106585571,LOC105889177,LOC108425179 coding upstream 208370 37545624 ~ 37549905 (-)
G66685 NA non-coding downstream 56991 37267782 ~ 37268223 (-)
G66613 NA non-coding downstream 305418 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 455059 36869417 ~ 36870155 (-)
G66535 NA non-coding downstream 473578 36851070 ~ 36851636 (-)
G66527 NA non-coding downstream 577471 36747515 ~ 36747743 (-)
G66740 NA non-coding upstream 157869 37495123 ~ 37495370 (-)
G66786 NA non-coding upstream 399509 37736763 ~ 37739197 (-)
G66817 NA non-coding upstream 562213 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 843783 38181037 ~ 38181274 (-)
G66872 NA non-coding upstream 940740 38277994 ~ 38278539 (-)
AMCG00020922 NA other downstream 257409 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 279275 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1042685 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1338502 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 1505384 35813873 ~ 35819830 (-)
AMCG00020943 NA other upstream 294523 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 1710450 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 3219876 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 4258826 41596080 ~ 41602270 (-)

Expression


Co-expression Network