AMCG00020944 (antxr1a,antxrl,LOC107553121,LOC107661337,LOC107562635,LOC106585598)


Basic Information

Item Value
gene id AMCG00020944
gene name antxr1a,antxrl,LOC107553121,LOC107661337,LOC107562635,LOC106585598
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37712999 ~ 37717080 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020944
gatgaggaggaggatggggCTCCAAAGAAGAAGTGGCCCACAGTGGATGCCTCATATTACGGAGGCCGAGGAGTGGGGGGCATCAAGAGAATGGAAGTCCGCTGGGGTGAGAAGGGCTCCACAGAGGAGGGCGCCAAGCTGGAGAAGGCCAAGAACGCCCGGGTGAAGATGCCCGAGCAGGAGTTTGAGCTGTCCCCTGCTCGCACCCTCAACAATGGCATGCGCAAGCCCCCCGGGCCCCGGAAGTGGTACTCTCCCATTAAGGGCAAGCTGGATGCCCTGTGGGTTCTGCTAAGGAAAGGCTACGACCGTGTGTCAGTGATGAGACCCCAGCCTGGTGACAAG

Function

symbol description
antxr1a Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).
antxrl Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

NR:

description
anthrax toxin receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020944 True 345 mRNA 0.61 3 37712999 37717080

Neighbor

gene id symbol gene type direction distance location
AMCG00020945 antxr1,LOC108236442,LOC103362313 coding upstream 27503 37669962 ~ 37685496 (+)
AMCG00020941 NA coding upstream 82905 37629324 ~ 37630094 (+)
AMCG00020931 loxl2,LOC106580522 coding upstream 486130 37203988 ~ 37226869 (+)
AMCG00020930 LOC106580522,LOC104937675,LOC107673422 coding upstream 527071 37183664 ~ 37185928 (+)
AMCG00020926 NA coding upstream 547697 37158652 ~ 37165302 (+)
AMCG00020946 anxa4,LOC107583400,LOC107758674,LOC107689041,LOC107558128 coding downstream 189191 37906271 ~ 37922454 (+)
AMCG00020951 NA coding downstream 313648 38030728 ~ 38031966 (+)
AMCG00020950 NA coding downstream 388932 38106012 ~ 38111899 (+)
AMCG00020955 LOC108426712,LOC103357663,LOC100712487,LOC106536361 coding downstream 509166 38226246 ~ 38228104 (+)
AMCG00020956 NA coding downstream 542438 38259518 ~ 38275155 (+)
G66780 NA non-coding upstream 62301 37650429 ~ 37650698 (+)
G66739 NA non-coding upstream 217618 37495121 ~ 37495381 (+)
G66701 NA non-coding upstream 403664 37304049 ~ 37309335 (+)
G66700 NA non-coding upstream 411401 37301248 ~ 37301598 (+)
G66696 NA non-coding upstream 424158 37288514 ~ 37288841 (+)
G66784 NA non-coding downstream 20652 37737732 ~ 37739188 (+)
G66801 NA non-coding downstream 120022 37837102 ~ 37862332 (+)
G66826 NA non-coding downstream 257723 37974803 ~ 38065665 (+)
G66861 NA non-coding downstream 523610 38240690 ~ 38244475 (+)
G66865 NA non-coding downstream 558910 38275990 ~ 38276294 (+)
AMCG00020942 NA other upstream 137143 37567036 ~ 37575856 (+)
G66551 NA other upstream 795563 36914815 ~ 36917436 (+)
G66506 NA other upstream 1456488 36254699 ~ 36256511 (+)
G66362 NA other upstream 1804597 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 1962553 35747156 ~ 35750446 (+)
AMCG00020954 NA other downstream 399982 38117062 ~ 38137073 (+)
G67108 LOC100846954 other downstream 2604033 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 2838886 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 3334392 41051472 ~ 41062527 (+)
G67323 NA other downstream 3881143 41598223 ~ 41602113 (+)

Expression


Co-expression Network