AMCG00020947 (nfu1,LOC101072203,LOC107752565)


Basic Information

Item Value
gene id AMCG00020947
gene name nfu1,LOC101072203,LOC107752565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37815894 ~ 37821863 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020947
TGCGGTGCCACTCACAAAAATGGCGTCGGGAAGGTGGTTTGGACGTATACTGCAATGTTCAGCTTTGCTGCCCACTTCGCTCCCGCGGGTCTCTGTGAGGGCCTGTCAGTATGCAGGGCTGCACTGGGTCGCACAAAGCACACAGAGGGCAGTACTGACTCCACGGCCCACAACAAACATTGCAGTGAGAAGTATGTTCATTCAGACACAGGACACCCCCAACCCCAACAGCATGAAGTTCCTGCCTGGTTGCATGGTGCTGGAATCGGGAACCATGGACTTTGCTGGGCCCAGAGATGCCCACTGCTCCCCTCTGGCCAGGCAGCTCTTCAGAATAGATGGAGTGAAGAGCGTCTTTCTGGGGCCAGACTTCATCACCATAACCAAGGGCCATGGGGATATGGAATGGAAGGTGATTAAGCCTGATGTCTATGCTGCCATCATGGACTTCTTCAGCTCTGGGTTGCCAGTGTTGAATGAGAACACCCCCCAAGCTGACACAGcaccCTCGGAGGATGATGATGAGGTTGTCTCCATGATCAAGGAGCTCCTGGACTCTCGCATCCGGCCCACAGTCCAGGAGGATGGGGGTGACGTGTTGTTCCGTGGCTTCGAGGATGGGATAGTGAAGCTCAAACTCCAGGGCTCCTGCACCAGCTGCCCCAGCTCCATCATCACCCTGCGCAGCGGCATCCAAAACATGTTGCAGTTCTATGTCCCAGAAGTGGAGGGGGTGGAGCAGGTGAAGGATGAGGAGGACAATGTGGAGCAGGGGGCCCAGTCCTAAGAGCTTGCCAGCCCCAGTCCAAGGCGTGCTCTTTTCCTCCTCATTGAACCAGCAGCACTCTTGAAAGGTCCAGATTTCTTCAAGAAAACATCAACGGGTGTCACAGTGCACCAAAAAGGGTCCAGACTTGGCACCCACATCCCCAGCTCTGTGCAATGTGTACTGTTGGTGAGACGACATGGGAGTTAAGACCACAGAAGTCAGTTTCAGAATTCGgcatagttgttttttttaagctttataCTGGGAATTGATCATCTGACATTTTTCTTGAACTGTTGAGACTGTGTTAGGTAACTACAGAATACAAATTTGGAAATGGCAGATGGATCTGATTGGAGAACAAACAGCCAACAGCCCTATCTGTATAACACTCCCTCTCTACTCTCCTGAAAAACCAGTTTTCCCACCCACTTCCTTGTCCCATATCCGGGCTGCTCCAGATAACTCGGGAACTATTACGCACAACATACTTATTACTGGCATTCTCATCTTTATGCCCTTCTGTGTTTCCTGCAGTCATGTTAAGatatttaatgtagtatattgTATGGATTACGAAAAACACTGTCTGATCCTTTGCAACAGATCAATAGGCCAGTGTATGTGCTTAATGTAGGATGTGATGACACATAAAATCTTTCCTGACTAATGACTAAAAAggatcaatatttaatttttagatACATTATTATGGAGTATGCTGTGCTTTTCTAAACTGCTGATTCCAAAGTAGGTTTTCTTTTGGAGCTTAGGGTGAAAATTTTGTAGGATCACCCTTTAATAaccctttaaattatttaatatgagCCTACATCTTAAAACTGTATTGATATTACGGAGTTTTGAAATATAACAGCAtttagaaaaagtaaaaatggtATGCGTCATCTTGTAAATTTTTTCCAAGGTAGGGGGTAAGATCCATCGCAGAAGTGCTCTTTGGCAATATTCTAGATAATAAGTGCCAATGAATTTGTTAGTTTAATCtcttaatatatttgtaaagaccagttattgtttttgcttcttCTAGAACACAGTGATCCAGACTGTACTAAGCATCTctacaaaacacacaagtgaAGTATTTCACACTGCAGAAACTCTCAAAATTGTGCTTAGAAAGGTGTACAGATATGTCCAttgaaaagtaataaaaaaaaaaaaaaatggtgtgggtataattgaataatttcagTTTTGAGCTGCAAATGTAGCcctcgg

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

NR:

description
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22074 NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020947 True 2014 mRNA 0.45 8 37815894 37821863

Neighbor

gene id symbol gene type direction distance location
AMCG00020948 gfpt1,LOC103362312,LOC108426669,LOC102792631 coding downstream 997 37772151 ~ 37814897 (-)
AMCG00020940 NA coding downstream 249774 37556580 ~ 37566120 (-)
AMCG00020938 acty,actr1,LOC106585571,LOC105889177,LOC108425179 coding downstream 265989 37545624 ~ 37549905 (-)
AMCG00020939 kctd9,LOC101468158,LOC102794741 coding downstream 276495 37534755 ~ 37539399 (-)
AMCG00020937 NA coding downstream 288126 37524705 ~ 37527768 (-)
AMCG00020949 LOC103357666 coding upstream 21037 37842900 ~ 37892340 (-)
AMCG00020953 NA coding upstream 146309 37968172 ~ 38030972 (-)
AMCG00020952 NA coding upstream 273239 38095102 ~ 38095590 (-)
AMCG00020958 NA coding upstream 410803 38232666 ~ 38238994 (-)
AMCG00020957 NA coding upstream 419883 38241746 ~ 38260001 (-)
G66786 NA non-coding downstream 76697 37736763 ~ 37739197 (-)
G66740 NA non-coding downstream 320524 37495123 ~ 37495370 (-)
G66685 NA non-coding downstream 547671 37267782 ~ 37268223 (-)
G66613 NA non-coding downstream 796098 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 945739 36869417 ~ 36870155 (-)
G66817 NA non-coding upstream 77604 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 359174 38181037 ~ 38181274 (-)
G66872 NA non-coding upstream 456131 38277994 ~ 38278539 (-)
G66920 NA non-coding upstream 873129 38694992 ~ 38697487 (-)
G66926 NA non-coding upstream 885409 38707272 ~ 38732240 (-)
AMCG00020943 NA other downstream 183318 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 748089 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 769955 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1533365 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1829182 35975764 ~ 35986712 (-)
AMCG00020970 NA other upstream 1225841 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 2735267 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 3774217 41596080 ~ 41602270 (-)

Expression


Co-expression Network