AMCG00020948 (gfpt1,LOC103362312,LOC108426669,LOC102792631)


Basic Information

Item Value
gene id AMCG00020948
gene name gfpt1,LOC103362312,LOC108426669,LOC102792631
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37772151 ~ 37814897 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020948
GGATCTGCGTATCCTGCTGCCACGTCTAAACTGCCCTCGTCGCCAGGCAACACGAGTGACGGCCGCTGCTCCAATCGGCGAGGCCGCAGGAGGTGCGTGCCTGCCGTCTGTCCAATAGGAGGGCGGAAGAGGCGGGTCTCCCTACGGCATCAGGGTTCCAGAGGAGGAACTGGAAACGCGTTGATCAGCCGAGACGCAGACATGTGTGGAATCTTTGCCTACCTGAATTACCATGTGCCGCGGACTCGCCGCGAGATCCTGGAGATCCTGCTGAAAGGACTGCGGCGCCTGGAGTACCGTGGCTATGACTCAGCGGAGCAGCAGGATGTGGACCTGGAGGTGGAGTTTGATGTACACCTGGGCATTGCTCACACCCGCTGGGCCACCCATGGTGCGCCCAGCCCTGTCAACAGCCACCCTCAGAGATCAGATAAGGACAACGAATTCATCGTCATCCACAATGGTATAATTACGAACTACAATGACCTGAAGAAGTTTCTGGAAAGCAAAGGCTATGAGTTCGAGTCGGAGACGGACACAGAGACCATCGCCAAGCTGGTCAAGTACATGTATGACAACCGTGAGAGTGACGACATCAGCTTTGCCACGCTGGTGGAGAGAGTCACGCAGCAGCTGGAGGGTGCCTTTGCGCTGGTCTTAAAGAGTGTCCATTTCCCTGGAGAAGCCGTGGGCACCAGGAGGGGAGGCCCGCTTTTGATTGGAGTCCGGAGCGACCACAAACTGTCCACAGATCACATCCCCATCCTGTACCGGTCAGCTGTGAAGGATAAGAAAGGCTGCAGTACCATCCCAAGAGTGGACCAGGACACCTGCTTGTTCCCAGTGGATGAAAAGGCAGTGGAGTATTACTTTGCCTCCGATGCCAGCGCTGTGATCGAACACACCAACCAAGTGATCTTCCTGGAAGATGACGATGTTGCCGCGGTGACCGACGGACGCCTCTCCATCCACCGCATCAAGCGCACGGCCGGCGATCACCCTGCCCGGGCCATCCAGACCCTGCAGATGGAGCTACAGCAGATCATGAAGGGTAATGGCCGGACTGGGCTAGGGAAGGAGATCTTTGAGCAGCCGGATTCTGTGGTCAACACCATGAGAGGAAGAGTCAACTTTGATGACAACACAGTGACTCTGGGCGGCCTGAAAGATCACATCAAAGAGATCCAGAGGTGTCGACGTCTGATCCTGATTGCCTGTGGAACAAGTTACCATGCAGGAGTGGCTACTCGTCAAGTGCTGGAGGAGCTTACAGAACTGCCAGTCATGGTGGAGCTGGCCAGCGACTTCCTGGACAGGAACACCCCAGTCTTCAGAGATGACGTCTGCTTCTTCATCAGCCAATCAGGAGAGACAGCGGACAGTCTGATGGCACTACGCTACTGCAAGGAGAGGAGTGCCCTCACCGTGGGCATTACCAACACTGTGGGCAGCTCTATCTCCAGAGAGACGGACTGCGGGGTTCACATCAACGCAGGCCCTGAGATTGGCGTGGCCAGTACTAAGGCCTACACCAGTCAGTTCGTGGCCCTGATCATGTTTGCTCTGCTGATGTGTGATGATCGGATTTCCGTTCAGCCACGTCGTCGGGAGATCATCCAGGGACTCCGTGTGCTGCCAGACCTGATCAAGGAGGTGCTGAGTCTGGACGATGAGATACAGCGTTTGGCGGTGGAGCTGTACCAGCAAAAGAGTGTCCTCATCATGGGTCGCGGGTACCACTACGCCACCTGCCTGGAGGGAGCCCTGAAAATCAAGGAGATCACCTACATGCACTCGGAGGGCATCCTGGCAGGGGAGCTCAAGCATGGGCCGCTGGCACTGGTGGATAAGCTCATGCCGGTCATAATGATCATCATGAGAGACCACACCTACAATAAATGCCAGAACGCACTGCAGCAAGTGGTGGCCCGGCAGGGCCGGCCCATTGTAATCTGTGACAAGGACGACTACGAGACCATCAAGAACTCGAGCCGAACCATTAAGGTGCCACACTGTGTGGACTGTCTGCAGGGTATCCTCAGTGTCATCCCCCTGCAGCTGCTCTCCTTCCACCTGGCCGTGCTGCGTGGATACGACGTCGACTGCCCTAGAAACCTGGCCAAATCTGTGACGGTGGAGTGAAGCCCCTAGCTGTGGACCacaacatgttgtttttttacatatcatTAACTCTAAGTGGCTGCAACGAGAAGCAAAAAtcaaacagaaagacaaattgggagggagggggaagaaatatttagatacattttcagattttatatgTATACTGTGCCACCCCCATTGTAGTGCAGCCCCAGCACCCCCTTCCCCTTTCTCAGTTAGTCGGCACAATGTATCTTTCCTTTACCTTCAACCCTCTTATATAAAGCTGTAGAAACCTATGTATTTaggatacattttattataatttttctttgtattttattttggctgTTTGTCAGAATGTTACGTTGTCTAGACTGGCACAGTGTGGGCTGGTAGTTACGTCTCCTGCTTATTACTTACGGAGCGAAAACTGAAGGACTTTTGGACTTTCACATGGTAGTTCAGTGGACAAATTCTCTAACAGAGCCCTAAATCATTCATGTTAGTTCTGCTCACTTTGAATGTTGTGCCCTTAAAAATCGAATTGGAATTCAAGCTTGGTCTTTAAAGCGCTGGCTGAACTTCCTGTAAGTTATGCAACAGTGATGTTTCTATTTCCATCGAGTCATCTGGTCTGGCCTTCGTTTCGACAAGCCAGAGCAATCTGGAGTGCAGGGAGTCCCATGGCAGTGCGTTCACTGATCTAGACTGGACCCTGATCCCGAAAGAGCTCCTGTTTGACTGAGCCTTGTAGTATCTCCTGTCGGAGCAGAATTACTGCTTAGCCTTGAGGTTGCCATGGTTACTTTATCCCCAAATCGGAGATGTTCGGAGCCCGTGCCAAATTCAGGTTTTATTTgacttctctttgtttttctgggCAAAAGCCACTTGCATAAGAACTTAATCAAAGTTATGGGGCCGCTGGTGCCTCGGAGATTGCCTGGCAGTGGGCTTATCCAGTCTCTCCATGGCAGTTCCTGAAGGATCCTAATGATAACCAGCTGATGCATGGCTCTATCACTTGTTCCACTAAGCTAAGGGCAAAGAAAATGACTCCTGTGTCCTCCAGTGCCTTCTTTGCCTTTCCCTAACAATTCTAGACTCTTAGCCCAGGGGTGTCCTACTCCTGTCCTGATAGGACTCTGAATCATCAGCACCTTAATTTCCCTGTGAGGCCAATAATGAGATTAAACTAGGTagttaagagctcaggtggaattcAGACCCGAAGACACTACAAGCATCCGGGACCAGAGTTGTGCAGCCGTGTCTGATTATCTGTATCCTGCCCGGATGTTAACAATCGGAACTCTTAAATTATTCAGTCTGTGATGAAGGCTCGTCTGTCTCTAATGTGGGTCTCGGAGCTtgactggaaaacaaattatgtaaatCCACGTTTTGCAAGTGAGCACAAAGTTTTAAGTCCACTCTCTGCAGGTTTTTTTAACTGCTGTTTAGCCTACTTAACTGGAATAGATAATGACTGGAATTGAAATTAGCAGGGAAATATGGAAACATTGTATAGATGGAATATGTGTAGCAAAAGGTGGCCTGATAAAAttaatggatgaatgaatgaatgaagactTAATTGTAGTGCTACTTGTGATATCCACAAGTACTACAATCTACGTACTAAGCTGTTTGAAGTTGCTTCacttaaaatggttttaaaatcaaactgttAAAGTTTTTGGGTGTCCTTGCTGCTGCAGATTTTTGTGCTGTGAATTATTCACTTTTTTACTTAAAATTGCTTCCTTTTATTATCTAATGCTGCTGCCAGCAGACACTAGAAATATTTTGAGGTATTTCTGCTTAACATGGGTTTAGTCTCGGTCACCACCTCATTCTTGTGGAGTTTTTTCGATTATCATGGCACAGCtgtacaaaatactttttaaagatatactTATCTATTTTCAATCCCCAGCCTGTCAATCAGAGTTAAAGCCGCTGTGGTCTGTCTTAATTTGGAGAGGTCTTTTGGAACATTGGTCTTAAAGGGAAGCAGTAGTTGAGAGATTGATGCTTTGGCGAGGATGTGTACCATTCTGCTGGCATTACAGAAACTAATGGACTATATTGCTGACAGAGGTTTCTTGGAGCAGACCTGCTGAATGCAGCTATGGAGCCTGCTCTGTGGGTAGTGAGGTGGCTATGAATCAGGCCCTGCAAATCAGGATCCCATGacctggttttcattccaaaacGTCAAGTTTTTAACCAAGCCAGAGCACCGACTGCTCACCTTTCACACCAACTACTGCACTAATCTGAAATGTCCCTTCTTAATGATTGAGCATCCATGGCAATTCTATAActgatgtgtttattatataaacataaataaccaaattACTTGAGTatacttcctgtttatttcttAATGAGACCATTTCTGTGGGTAGGCTTTATGTGGAAATGTCCGTTTCAGATCAATGTGCTTCATAGAATTTATTTGGTTATAAACAAAGGTACTGGTGagttaattttaattcattattatgacTTAGATAGGATTTATTGCACTGGCTTGAGCACTCTGAATGTAAACCCAGTCATCAGGCCATCGAAATTCACTTGAGAATgaagaagcatttatttttaaaccaaactGTAGAAGTCAGCGATGGGCGAACTGGAAACAGCTAGTAGAAGAACAGCCTgaattgaatttttttttttttttgccatgttACTATGAGGGCTCCCTCCCTCCAGTTTCCAAAAGCACTGGAAATTGTAAATGAAGGATTTTACAGGCTCGAGATACTGTTACAAAGCCAGCCCACACTTTGCCATTGAACATGACATTTGATTGTAGTTTGCGGGAccatttttatctttattattgttataattatttttgtatgtatgtgtatgtgggGAGTGGGAGGGGATGATGGAGTGGGGCACAAATCTTCATCACAGACTTTGAGTCTTCTTACAGTTACTTCTCTTAGCTTCTCATAACCCGGGCTGAGAAACCCCAACTCGTTAGTATGACATCTTTTTCCAAATGAGGTTCTCCAGTCTCCTTCACTCACATGTGGGTTCTTGCACAGGTTCTTGGGGCAAAAAATGAAGTGGGTATACAAACACATTGGTTGTAGTGATTCAGTTACTGAATGCAAACGCTATGCAAGTCAAAACTTAGATTTAAAGGGAGTTTCTTTACCATAAGAGGACTTATCATGACATTTACAAACTAATGGTAAAGAGAGCCAATTTTGGTTGTTTAACTTTGAGAATCTGACTGAGAATCTCTGGCTGTTAGGTTGTCTGTGTTATGTTGTGATCTACCTGCATTTGAAGCAGAAGTCATTAAACCGCTGCTAACCAAGTAGCCTATTAAGAATAGTATTTGTCAAACTGAAACCAGATCTGTGTCGCTCTTCACAGCTTCTTGTTAATTTGTGAAAATTGTGTGGAAAATCCAGTGTGTTATAGACATTTTAGTAACATAATGACAGTAATGAATAAAGTCAATTTTAACCTGGTGTTGATAAGATGATGGCAGTTTAAAATGTGGAACAACTGAATTggatgccttttttttttatcaccaaCAGAAAGACTCAATCAGGTGAAGTAATTGATTAACTGTCATTAAAAGTTCAGTTGTATAAGCGAAGTAATAAATCTATTCAAAAGCAGGTAGATCTGGAGGTCAAAACAGGTGGGCATCTCCTGGGGTCGGTTGCACCTCTTAGGAACTTGAGCCCTTCCTGAATTATTTTGCCATCGAGCTCCCCTTGAAATCTGCACAGCACTGGGGTTATCACTGGATATACATAATGTGAAAGGGACAGACACCAGACCATCCTGTTGTCTAAGCTTATAATGCAAGAGAGGGTTGTCCTTTAATTAACCAAAGCATTTtgaataccttttttttttttttttttttaataaagaaacaaaccaatttaaaaCCAGGACttgaactgatttaaaaaatgcagccCGAGATAATGCAAccatttctgatttttttttgtttgtttgtttgttttgtaccaTCACCTCCACGTGTTCCAAAACATCTTCTCACCTTTCCAGATTTGTGTTTACTGTTAAAATAGTTTCATTGAAACCAGTGATTGTGGTTAAGGTACTACATTGACATTCAACCTCCTGGATTTTAATTCCTATAGAAAAGATTTGTTAGAAGTAGGGTGGATTTATTGACAGTATGTATTGCAATAAAATGAATTCCTTTGTGCTTTGTCAACA

Function

symbol description
gfpt1 Predicted to enable glutamine-fructose-6-phosphate transaminase (isomerizing) activity. Acts upstream of or within several processes, including melanocyte differentiation; neuromuscular junction development; and skeletal system development. Is expressed in notochord and polster. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 12 and obesity. Orthologous to human GFPT1 (glutamine--fructose-6-phosphate transaminase 1).

NR:

description
PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity molecular_function

KEGG:

id description
K00820 glmS, GFPT; glutamine---fructose-6-phosphate transaminase (isomerizing)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020948 True 6354 mRNA 0.45 18 37772151 37814897

Neighbor

gene id symbol gene type direction distance location
AMCG00020940 NA coding downstream 206031 37556580 ~ 37566120 (-)
AMCG00020938 acty,actr1,LOC106585571,LOC105889177,LOC108425179 coding downstream 222246 37545624 ~ 37549905 (-)
AMCG00020939 kctd9,LOC101468158,LOC102794741 coding downstream 232752 37534755 ~ 37539399 (-)
AMCG00020937 NA coding downstream 244383 37524705 ~ 37527768 (-)
AMCG00020936 LOC106579865,LOC105014025 coding downstream 317283 37398299 ~ 37454868 (-)
AMCG00020947 nfu1,LOC101072203,LOC107752565 coding upstream 997 37815894 ~ 37821863 (-)
AMCG00020949 LOC103357666 coding upstream 28003 37842900 ~ 37892340 (-)
AMCG00020953 NA coding upstream 153275 37968172 ~ 38030972 (-)
AMCG00020952 NA coding upstream 280205 38095102 ~ 38095590 (-)
AMCG00020958 NA coding upstream 417769 38232666 ~ 38238994 (-)
G66786 NA non-coding downstream 32954 37736763 ~ 37739197 (-)
G66740 NA non-coding downstream 276781 37495123 ~ 37495370 (-)
G66685 NA non-coding downstream 503928 37267782 ~ 37268223 (-)
G66613 NA non-coding downstream 752355 37013981 ~ 37019796 (-)
G66536 NA non-coding downstream 901996 36869417 ~ 36870155 (-)
G66817 NA non-coding upstream 84570 37899467 ~ 37899878 (-)
G66851 NA non-coding upstream 366140 38181037 ~ 38181274 (-)
G66872 NA non-coding upstream 463097 38277994 ~ 38278539 (-)
G66920 NA non-coding upstream 880095 38694992 ~ 38697487 (-)
G66926 NA non-coding upstream 892375 38707272 ~ 38732240 (-)
AMCG00020943 NA other downstream 139575 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 704346 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 726212 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1489622 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 1785439 35975764 ~ 35986712 (-)
AMCG00020970 NA other upstream 1232807 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 2742233 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 3781183 41596080 ~ 41602270 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036023 gfpt1 coding NC_007119.7 CM002892.2 49975160 ~ 50037559 (+)