AMCG00020954


Basic Information

Item Value
gene id AMCG00020954
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38117062 ~ 38137073 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020954
CAGCAGCGATGTGCGTGTGCTGGAGCTGCCGTGGACGCGGAGTAGGCTAACGGTCATAAAGTCATCAATAACACAGACGGGGAAATATGTCGGCTCTCTCCGCATTCCTCGACATCGCCATTGCCCCGCCGAACCCGGAAAGGAAGCTGTTGGCAGCGTTTACTAAAGACACGCACTCCAGTAAAGTCCACCTGGGAAGAAGGGagcacCTCAATGAGGATGGTCAGTGCTCTGTGCTCCCTCTCGTTTTGAAGATCCGGCTGCAGGCAGCTGGTGACCCCACACTGACTTCAGACTATATGCCTACCCTGGGCTTCCCAGAATTCACCAGGAGTGTGATGGAGCTGGCACTGGGCAGAGACAGCCCTGCAATCATTGAAAATCGGACTGTGGGTGGGACTGGAGCAGTTCGTCTGGGTGCGGAGCTCTTAAAACGCTGTTACAATGTGGGTGTGGCCTGGTGTGGGCCAGTCTATCTCTCCTCTCCCTGTGACGACTCCCTGGCCAGAACATTTCAGGCGGTGGGGATCAGAGATGTCCACCACTACCGCTACTGGGATGCAGAGAAGAAGAGTGTGGCTGTCGAGTGGCTGCTGGAGGACCTGGAGGCAGTTCCAGAGCAGGCGGTCATTGTGCTCTCCGCCTCAGGACACTGCCCCACTGGGGCTGACCCCAGTCAAGAGCAGTGGGCCTCTATTGCTCAGGTCATGATGAAACGCCGGCTCTTCCCCTTCTTCTTGCTGCCTGCTCAGGGCCTGTGCTCAGGTGACCCTGCCCGTGATGCCTGGCCACTGCGCCACTTTGTCTCCCTGGGGCTGGAGCTGCTATGCGCTCAATCCTTCTCCCACAACTTCAGGCTCTATGGAGAAAGAGTGGGAAGCCTTCTCCTGGTCCTGAAGCAAAGCGCCACTCTGCTGGCTCTCCAATCACAGGCTGAGGATTTGGTACGCACGCTGTGGTCCCACCCACCTGGGGGCGGGGCCCGGGTGGTCACCACGGTGCTCAATAATCCCGCCCACCTGGCTGAGTGCGTGTCCGGTCCCATCATCCTCATGGCTGTTTCCCTTTTGACCAGTTCCATCATGTTCATTCAGATTCCAAAGCAGGTGGCCTTTCTGGcaaacaaaagacacatttaCCTGCCAGGCAACGGAAGCCTTAACATCAGTGCCCTCAACAGCCGCAATCTGGACTATGTGGCTGAATCCATCCACCTGGCCATGACCTCTAACCCCTGACCCCTGTAGGGACTCCTCGTGGTCGCTTGGATACCTACAGAACATCCCAGTGGTTGCTGGAACCTGGTACTGTAGCTTCCATTATAGTCTTCTCTTAAAACATCAACTGTTTGTGGGTATCCTTGAAGAAACCACctctttaatttgttattttgtttttgtaactcTTCCATCTGTTATGTAGGCAATGGCAATAAAGTCTAGTAGAACACTTGCACTGgcttaaaatgcattcatatgaAAGTTAATATTGGTTCtgcataaattaattatttgggaTTATTTGGATTGTGAGGGGTATGGGACACAGATTGTCAATCAACCCTGAAAGACAGCTgcaataatttgtattgtttaatcaGCACTGACCATGCTTTCAGGgtttatctgtctctctcagcaGGTGAGCCAGTTTTCCTCATTTCATCTCCCAGTGCTGTAGAATCAATGCAAAGTCTTGCAGTAGCCACCTCAGTCAATGATGCAAGTAGTTGAATAATCACTTTGATCAGCAGTGATATATAAAACGTTAACAGCAGCTTAGGTTCACCAGTAAGGACACACTTTATATTCTAATAAAGTTCTATTCCAATTATGAATCTGTCAAGAGCAGCTGAAACCCCGGCCTCTGTGAACTGAGGTGGCTTATCAAAGCAGAACAAGGACATCAGTCCTGCTGCTGATTGGACAATCTCGGCACTGTGAAATTGTATCATGTAATATGTAACTCATTCAGCCACAtgatgtgtctgtctgttcatGAGGTATGCTGTGGCGTCTGTTATTAAGACTTGAATAACCATCAAAGCTGTACATCAAAATGATACATGTGCATTGCTTTACAACATAGGGTTAAGTTACCCCCTGGGCTGTAAAAACTGGAGTGTTCCATTATTTTAGGAAATCATGCTTGATACGTCTATCTGGAATCTAGATTCCTGAGATGGACAGATTACATTTGCATACAGCATTACTGTGCATCACTCAGAGAGCATTAACTAAAACATGCAGgggcagtttttttgttttacacaaacaaTGTACAAACTTTCAGCACTTAGTGTAGTCAGCATATTACCTTTCTGTACTGGCTTTATTTTCCATAATCGATATGCAACCTAAACACAATGTGGCTTGTGCTTACATAGATAGACAATCATCAGTAATCTAGTGTGAGCAGCAGGGGTGAAGTAGGAGGCTGTAGCAGGCAGGAGGAGACAGAAAAATCATCAGGCATGCCATATTTTTGAGTTTTGAAGGGAAGCCATTAGGTAAGAGAGTTGACAATCAGAGTAGCACAGAAACTCAAGATTCAAAGCCAACTGTAAATCCCCTTTTAGGTAGGAAATGATGACCTTTTATAAAGGATTCCCATTGTATAGTGTAATTTGCACCATTTCGTGCAAGAAAAAGCAAAATCGGAAGCAATAACTCATCAAGAAAAGATGAAACAGCCCCTAAGTGCACCACTGCACAGAGGTCCTTGATTAGATTCTCTTTGTAAGAGTGGCTGGATTGTTCTTGCAGGAAGATTGGATGTAAATTACTGCTCCCATGGAAATTGCTTGATGCGTCAGAGCGTAACAGAAGGGACTGTCTCAAGGAAGATTGAAATTTTGTCACCTGGAACATTGCTGCCCAATTTGTAGTGCTGTGATAATTAAGGGTTGGTCTGGAAGAACTCAAGCCATAGAACTCATGTGAACAGAACCTGGACTTCCATTACCCTGTATTCACATTTTGTGTAACGCTTCTTTCTGTAAGGAACAATAAGTCCTATTGCCAGCCAGACAGTCACAGAAATGTCATataaatgcttttgttgttAATAGACagacattattacattaataaagaaatgcagataGATGTGGCAACAATTCCCCAATGGGCCCTATGCAGTTGGCACCATATACTGGGGTTGAGTGTTCAGGAAGTCAGATATGGTTTTCTCAGTTAGCTACTTAGTGGGTTGGAACATGTTAGCTCTACAGATGAGAGCTGTATTACCCTTATTCAAGTTTATCCTAGGAAATTAaccattaatgtgtttttaccatagttttataattgtttcctatgggttcaacatggctttattttgctttcctaTACTGGATTATGGGAATACCTGTCATCCCATAGTAAATGTTTCCATGGCATGTTTACTATAGTACACATTGGTTTATCCATAGGAAAGCACAGCAGAGTTATAGTAAAACCAAGGGAAATCCATGCTAAAGTGCAAAGTGATAAAATGACCAAGGAAAACATGCATAAGGGTACCTACCCCTCTCTACAGTACTGTACCACGGCTGTTTTCAAAGTGGACTCGCAGTGTGAGAAGATGCAGATTGCAGATTGcgttatgctttgaactgtagaACAAAGACTTCTAGTATTGTATTCTATCTTTTTGGTTATTCCACTCCAGAATGTAAAACTGGATTACACTGGATGTGAATCCCCTagtacaaagtacaaataaaaacataaaaataacaactaacAAGGTCTAATgtcatttaatcatttcaattaatacattGCAATGGAGTGCCTGAAATCAG
>TU83538
CCAGCAAAGAGGAAGTAGTAGTCTGTGCAGggcaatatatacaaacaggaagcagatAGAGATGTATGATGTGCAGAAAGGgctataggcagctttgatagtcaGATGTTTCGTATAAGGCAGCAGGAATTCAGACTGTGGGTGGGACTGGAGCAGTTCGTCTGGGTGCGGAGCTCTTAAAACGCTGTTACAATGTGGGTGTGGCCTGGTGTGGGCCAGTCTATCTCTCCTCTCCCTGTGACGACTCCCTGGCCAGAACATTTCAGGCGGTGGGGATCAGAGATGTCCACCACTACCGCTACTGGGATGCAGAGAAGAAGAGTGTGGCTGTCGAGTGGCTGCTGGAGGACCTGGAGGCAGTTCCAGAGCAGGCGGTCATTGTGCTCTCCGCCTCAGGACACTGCCCCACTGGGGCTGACCCCAGTCAAGAGCAGTGGGCCTCTATTGCTCAGGTCATGATGGTGAGCACTGAATCAGTATCTGAAGCTGACTCTGGGCAGAAACGTCTGGATAAAATGCTGAGAGTGATTTGTTACTAGAGGGGCaacattttgttcttattttgacAACACACCTCAACAAAATGGAGAATTATGTTGGGAATCAGATGGGATTCTAAAAATAGTGAAAGGATGAAATGTTTTCACTTCTCTTAACTGATTTCATTCCTTTTGAAACACAACTACTGGTGAACCTGAAAAACAGGATGATAGCATGCAACTTCAAACTTTTGAACGAATACTGAGTGCcatagtgttatttttaaaggaggTGTGTATTTGTGGCTCTTGTAGGCCCCCCACCACCCCTGTATAAAGCCTACAACTGCGGGGTCCTCCAGGTAGTCCACTGCAGAGatgtaacatgttttttatatatataaaacggGTTGCCACACTGTTAGCTCACTCCACAAAGGACAATAAACATCACTCTAAG

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020954 True 3808 mRNA 0.45 8 38117062 38137073
TU83538 False 939 lncRNA 0.47 3 38121779 38123587

Neighbor

gene id symbol gene type direction distance location
AMCG00020950 NA coding upstream 5163 38106012 ~ 38111899 (+)
AMCG00020951 NA coding upstream 85096 38030728 ~ 38031966 (+)
AMCG00020946 anxa4,LOC107583400,LOC107758674,LOC107689041,LOC107558128 coding upstream 194608 37906271 ~ 37922454 (+)
AMCG00020944 antxr1a,antxrl,LOC107553121,LOC107661337,LOC107562635,LOC106585598 coding upstream 399982 37712999 ~ 37717080 (+)
AMCG00020945 antxr1,LOC108236442,LOC103362313 coding upstream 431566 37669962 ~ 37685496 (+)
AMCG00020955 LOC108426712,LOC103357663,LOC100712487,LOC106536361 coding downstream 89173 38226246 ~ 38228104 (+)
AMCG00020956 NA coding downstream 122445 38259518 ~ 38275155 (+)
AMCG00020962 rhobtb2,LOC106585588 coding downstream 354639 38491712 ~ 38516342 (+)
AMCG00020963 egr3,LOC106579855,LOC106585589 coding downstream 551090 38688163 ~ 38694505 (+)
AMCG00020964 NA coding downstream 619662 38756735 ~ 38772815 (+)
G66826 NA non-coding upstream 51397 37974803 ~ 38065665 (+)
G66801 NA non-coding upstream 254730 37837102 ~ 37862332 (+)
G66784 NA non-coding upstream 377874 37737732 ~ 37739188 (+)
G66780 NA non-coding upstream 466364 37650429 ~ 37650698 (+)
G66739 NA non-coding upstream 621681 37495121 ~ 37495381 (+)
G66861 NA non-coding downstream 103617 38240690 ~ 38244475 (+)
G66865 NA non-coding downstream 138917 38275990 ~ 38276294 (+)
G66887 NA non-coding downstream 287639 38424712 ~ 38425252 (+)
G66970 NA non-coding downstream 873506 39010579 ~ 39010849 (+)
G66995 NA non-coding downstream 912348 39049421 ~ 39049631 (+)
AMCG00020942 NA other upstream 541206 37567036 ~ 37575856 (+)
G66551 NA other upstream 1199626 36914815 ~ 36917436 (+)
G66506 NA other upstream 1860551 36254699 ~ 36256511 (+)
G66362 NA other upstream 2208660 35867393 ~ 35908402 (+)
AMCG00020874 NA other upstream 2366616 35747156 ~ 35750446 (+)
G67108 LOC100846954 other downstream 2184040 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 2418893 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 2914399 41051472 ~ 41062527 (+)
G67323 NA other downstream 3461150 41598223 ~ 41602113 (+)
G67459 NA other downstream 3915857 42052930 ~ 42053675 (+)

Expression


Co-expression Network