AMCG00020957


Basic Information

Item Value
gene id AMCG00020957
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38241746 ~ 38260001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020957
GTGGTTCGAGCTGGTGTCTAAGGATGGAAAGAAAGACAAGGAGCGTGGGGAGGTACTGGTGAATGTCCAGTTCACGCGGAACAACATGACGGCCAGCATGTTCGACCTCTCTGTGAAGGAAAAGCCACGGTCAGGCATCGGCAAGCTCAAAGACAAGATCCGTGGCAAGAAGAAGGATGGCTTCTCCGACTCGGTCTCCGCCATTGTGCCCTCCTCCCAGGTGCTGACGGACAGCGAGGGCGAGACGGAGAGCCAGACCTCCTCTCCTGGGACCAAGAAGAAGTCCAAGCTGAAGTCACTCTTCAGCTCCAAGTCCAACCTGCACCGCAACGTGTCTCAGTCCATGTCCACTCTGGAGACCCTCCCTGAGAAGAACTCCTCTCTCAGTGGCAGCCGCTCGTCCGGCCTCAACGTTGACTCTCCTGATGTGAAGAAGAAATTTAAATTCCTTACCCACAAGCGCGAAGGGAGCACAGACTCAAAGACCCGGGACCCCTTCTCCCTGCTGCGCCCCAAGCAGAGCACCCCCGAGCAGAACGTCTGCATCAATGGCAACCATGTCTACAAGCAAGAGCCTGAGTCCAGGACCTCTCTGGCAGGATCCAACCAGAGCCTGAACAGCATAGAGCAGGGCTCTATTGAGGATCTGCGCAGGCTGAGAGACAGGAACAATTCGGGCTCCTCTGCAGACTCCCTGAAGGGCTTCAGCCTGCCTTCCTACCGGGCCGAATCCCGAGAGAGGGCCTTGCAAGAGCAGCAGCTAAAGAGgcaagaggaagaggagaagcgTGCTGAAGAGAGGCAAGCCGAAGAGTGGCGCAAGGAGGAGGCCAGGAGACTGATTGAGGAGCGCAGACAGCATGAGGAAGCAGAGAGGAGGAAGATGGAAGAGGCCAAAAAGGCAGAGGAGCTGAAGCGGCAGGAGGAGGCCAAGAAGAGCGATGTCAAGGTGTCCTCACTTCTGGACAAGGTGATGCGGAAGAAGGACAATGGGAAGAAGGAGGAGCCCGAGAACTCATCTACTCCATCATTGGAGAACAACAAGCCCCAGGTTCTTCCCAGGAAGCTCTCAAAGGAGTTTGTGGAGGTGCCCCTGCCCAAGTCCCCCCAAAGCCCCTTTGATGACTTCTCTAAACACCCCTCTGCCAACTCCTTTGAAGAGATCCAATTGAAGCCGGAGTCCTTCAGCACCTTTGAGGAACCTGGGGTCAAGGGATCCAGTGCTCCCAGCTTCCCAAGTCGAATAGCCAAGGTTTCTGCAGTCAAGCCCAGATTGTCCATGTCTCCGAAGGCTGAAATCAAAAAAGgccctctcccctcccttcccACCAGCCCTGGCTCCCTTGCTAACCACCCCCATTCAACTTCCCCACCCTCCACCCCCAGTTCTCCTTTCGGTAATCCCCCATCCGAGTCCCCCAACCTCTTTGCCAGCCTGCACACCTCTCTTGCTCCACCCAAGGCCAGAAGAGATTCCAGGGACTCAGTCAGTGGCAGCAATGAGAATCTTGCCACAGCGGGTTTGCCTCCCTCCCCGACTGACAAAAAAAGAACCACTCCCTTACCCCCTGGGGAACCTCAGCCGAAACCTCAAACTCAACCCCCAACACCCACCAGCACTGAGCTGGACAACCCAGAACCAAACCGGCCTAAACCCGCTCCACGGTCCCTCACCAGTAAAACTGCTGCTCTGAGTGGGTATTTGCATCCCATCACTGAGGTGGAGGTCACGGGCAATGCAGAGTCCTCCAGGCCCCAGAAAGACAAACCATCTGTCCGCTCCCCTCCAGATTATGATACCctgtttcaaaagaaaaagcatgGGGTAAAGGGCCAGCTGCAATGGGACCAAATCGTGGCTGAAATGGGCCAGCGAAACCGAGAACAGCCATCTGTTCTTGTAGGACAGGAGATGAGTGTGGACGGGCCTGATACAAGTGTGGTTGACCCCAAACTGCCAACACACCATGAACTAAATCCTGAAGGCAACACTGGAGGAGAGCTGAATAACAGCAGCCCTGAAACAACCCCCACTGTAACATGGAGGAGATTTGGATCAAACAACGCTCTAGGTTCTTCTTCCAAATCCACTGGTCTTACGACGACCCCAGATGTTAGTGGAAAATTCAGTGAGAGTACTAGCCCTAATAGTCCTATCAAAGaccaaacaaaaccatttgGAGAAAAGTCCAGGTTCTCGGGAAAGGAGAGTGAATTTACCGTGAAGGATCCATTTGATGTAGCTAAAATTTCATCACCAAAGGAAATACTGTCTCCTTCTGAGAGAAGCACCACAGATCTGTTCTCTGCAAAGCTTAAACGGGAAGCATCTGATAAAGCTAAGGAGGCACCTCCTGTAAAAGCCAAACCAAAAGATACTAACCGAGGGTTAAGGGAAAAAACACTGCAAGATGAAATCACTGATACGAACACTGACACCGTATTTTCAAGACTATCACTTTATGAAGGAAAAGATACCAAAGTATTAGCATCACAAGCTTCTTTTGAAAAAGATGTCAAAGTATTAATGCCAAAGGACAATCTAATAACTAGGGAAACTGACCATACCAATACCAAAGAGACAAAACCAATAAACACTTTGGAGTTATTGGCAAAagcaaaggaaaaggaaaatgtcaGCGTGAGACTCAAGCCAACGTCTGCTAACGCAAATCCTCAAGATGTGACCGGTGGCCTCCGTAACGAGAACATTAGGAAGGTACCTTCattggaggaggagaaggttGATCCTTTTTCCAAAGACCTGTTCTCCATCACAGGTGAGCAGTCGGTAACTGATCAAGGTCTTCAAGGTATGGACAAGAAAGAGCACTTAAAGGACAAAAAGACTGATGAATGGATGCTGACGACAGATGACCTTGACAAAATCTTGGAACTAAAGGACCAGACTGAACCGTCTGACAGCCTGTCACTTGAGAAAGATGCCAGCAACTCCCTCACCCATTTTGGAAAGAAGCCAGTTTCAGAGAAGGAAACGGATGACCTCTTCTTAAATTCTAAACAGACATCACAGAAAAAGGTGGAGGAGGTCTCCCCTAAAGAAGACAAAAGCCAGCATGAGGTCAAATCTAGCCTTTTGAGAGAGGtttcaaacaagaaaaaacaggcACCACCACTCCCTCCTTCAAAAGAAGACCTCCCTAAAGACGGGATGAGCAGCAGCACTTTGAGCTCGGCGCGGACAAGAGGAATGAAACCAGAGAAGGATGGCATAACGGACAAGGACGGGAAAATGGAATTGCCAAGCACTGAGCAGCGATTGGAAGATCgcttctctccctcctctcccccatCCTCTAACATGTCCCACTCCTCTCTCTTGCCCCCCTCCCCTGGTCTTCAGAAGAAGGCGGTCTCGGAGAGCTCCCCCAAGCCCGGCGTCGGAGGCAAGACCCTGCTACGTGCCTGGGTTTCACCCTCGGAGGCACAGCCAATTGCAGCGCAGAGCAGCGGCGAGATAGGGGGCGGGCAGACCTCTGGGCAGCGCAGACCCCACCCTGTGAAGCCCATGAACTCTCAGGATGGCCAGCTGCTCTCCAGCACCGCCCTGGGGGGTGTGTGGGAAAACATGGCAGGGAAGGCCAAGGTGGGCAACTCCTCCGGCAACTCCCCGTACTCCCAGCTCAcccaggaggagctggtctcATTGGTGGTGAAGCAGCAGGAGGAGCTGGGCAAGAAGGACAGCAAGATCCTGGAGCTGGAGGACTACATCGACAACCTGCTGGTGCACGTCATGGATGAGAAGCCCAGTATCCTGCTGGCTATGAGCAAGACCAAGAAGGCCATGTGAAACATCGGAGGCAGGAGCCACTTGGCACACGCTTGGGCTCCCCCCACCTAAATCACTCCTTTTCCTCCAtaccctctccctcctccctctttATCACATGCACTTTATCTTCAACGAGACATCAGATTATCTGATACAGATGGTTCCTGCACCCAGTAAAACTTTTTTCTTCAAACCTTTTTTAATCATGTGTAGAGATGCAGCATTAGTACATCAATATAGAATACTTTGGGGAAAactttttcttgatttaataccaTATAATTTGCAGTActgttaacttttttttgtcactATAAGACTATTATAATCACACTCTGCACACAATGGTGTACAGTAAGTCATACTCtgcttttttcagattttaaaccCAGATGAGTCTTCCTTTTAGATTGAATTGTGTGAGAAGATCCCTATGTGGGACTATGTAATACAAACCCAAATCAATATAGTTTTGAAACAACATACTCTTTCAGAAATGGAAGAACAAGTTATTGGTATATGTATTCTTATTCAAGATCATTTCTTCAATCAAATTTTAGATCCTCTTTCTCCAGAATTGTCATTTGTGTGGCTATAATTCCCTTCAGGAAATCATGTTTAAATAGTCTTGAAGAAATATATGGGTTCGTAGAATGTACATGGATTTAATATATTTGGGGGTGATGTTAAACTAAGTATGTATTGTTACTCCAGTTCAGcttgttgtttttgaatatcAGAAGCCTTAAAGTTATGCTAGTAGGCTTGTATCATGGTGGAAATTAAATCGGCCTGGTTTCAGATACTGGGGCActatcagacacacacacacacttgaacACTTGAGCCAAGTGTCCTAAACTTACCTTTCTCAATGCCTTACTTTTATACCCATGTACTAAAACCAGGCACAATTATAGTATCTAacttttatatgtataaacaaatgTTGGTTACACGTGTTTTATCAATTAATGTTTATTGATCAATCGGattaaaacaagtattttatttaaatgcattctaGAATGTCACCATTTGATTTTGGTTGTGGtgactgaatatatttttataggtCTCtagttcacttttttttatacatgtacTTCTGTTGGTAATTAATAAGCTTTTGAAGTATTGTCTGTACGAAGCTGTGAATCAGACTTGCTTTGAAAGGCACTGTGATGAAGTCCACCGAAATGGCTTGGTTTAAAGTTAAAGAGGGGTTGTAACTTGTGTAAGTGGCACATGCAAAAATAAACGCTAGGATACCTCTAAGCCATACCAGATCCCAgtacatcttttaaaatctcCTGTCAAAGCCTAGGTAATGATTAAACAGATTTAAGGTCTCACCCCCCACATTGCCAGCTTTGTGTTGAGGTGGAAATGCAAgtttttctgtcctgtttttttatttattttttatttatatgcctCCCTTATTGAAAAGCTTGCTTGTTGTGGAAAAAAGGTGGGGGTTGTACATGTGGGAGGCCATACCAGCCTTTATCTGTAACTTCCTTTGTCTGGGTGACTGGGCTGACTAAGAATGAATTCTTCAGAATTGAACTTCACTACCTTCCCCAACAAGCGTCTTTTTAAAGGCCAAAAATGGGAATTGCATTAGTTTTGGAATCAAGTTTTAAAATCTGCTAACGGGTCCGCATTCGGTCCAGCCAAATCCTTGGCAGTGTTGGCAGATTGGCAGATATTCTGATGCGATAGTGTGCCCTAAAATGGGAGAGAGGATACATAACAAGCCTGAGGTAGATTTAAGACCATCTTGCTTGGCCTATTAAATGAAAGCACTGGGATTTGACAAAACTTGTACCAGACTTCTCACCAGCTGCAAATTCAGAGAATCGCATGCTAGCCAAAAATCCCAGCATCTTATGGGTCCTCACCTCGTGTGCCTACGGTGAATACACAgcctaaataaaacactgtgaaaGCCGAGCCTCACTTACACCAGTATATTCAGAGTTGAAATCATGTTATTTGAAATCATACCCTATTTGCCTGCTTTGAGACCACGTGAAATGGgctgctgaaatgtatttaaacagttcattatgtggaattaaaaatgtaccttttttttttttttgggtcatTGTTacctttttggttttgtgaaaaactattctatttttaagcattataacttttttttcagtaacttagaaattattaaatcttaaaactgcaaaaagcatcttgcattttaaagcatgcaaACATTGTGGAGGAGGATTGTGAATAATAGGGTTTATACAtcattattacattaacatttgaGGGTAAGTCATTATTAGTGCTGTACTTGCTTGAAAGCGAACTTCTATTTGGTAAACtgggttttccttttttgttaaatgttgctTCAATAGAATGTGTATATTACAAATAGCAGAAGATTTTGAATAATACTCTATTTTGTAGATCTTCAAATCCTACAATAAAAAGTGGCTACCTTTTATACAGTGCCTTGGATACACATTTTGGAAGAAATGCcttctgaatttttttttattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020957 True 6336 mRNA 0.46 5 38241746 38260001

Neighbor

gene id symbol gene type direction distance location
AMCG00020958 NA coding downstream 2752 38232666 ~ 38238994 (-)
AMCG00020952 NA coding downstream 146156 38095102 ~ 38095590 (-)
AMCG00020953 NA coding downstream 210774 37968172 ~ 38030972 (-)
AMCG00020949 LOC103357666 coding downstream 349406 37842900 ~ 37892340 (-)
AMCG00020947 nfu1,LOC101072203,LOC107752565 coding downstream 419883 37815894 ~ 37821863 (-)
AMCG00020959 NA coding upstream 18634 38278635 ~ 38300419 (-)
AMCG00020961 NA coding upstream 106126 38366127 ~ 38410862 (-)
AMCG00020960 NA coding upstream 167879 38427880 ~ 38458638 (-)
AMCG00020971 NA coding upstream 745429 39005430 ~ 39009794 (-)
AMCG00020974 NA coding upstream 834496 39094497 ~ 39096651 (-)
G66851 NA non-coding downstream 60472 38181037 ~ 38181274 (-)
G66817 NA non-coding downstream 341868 37899467 ~ 37899878 (-)
G66786 NA non-coding downstream 502549 37736763 ~ 37739197 (-)
G66740 NA non-coding downstream 746376 37495123 ~ 37495370 (-)
G66685 NA non-coding downstream 973523 37267782 ~ 37268223 (-)
G66872 NA non-coding upstream 17993 38277994 ~ 38278539 (-)
G66920 NA non-coding upstream 434991 38694992 ~ 38697487 (-)
G66926 NA non-coding upstream 447271 38707272 ~ 38732240 (-)
G66927 NA non-coding upstream 464290 38724291 ~ 38772808 (-)
G66994 NA non-coding upstream 777159 39037160 ~ 39038645 (-)
AMCG00020943 NA other downstream 609170 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 1173941 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 1195807 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1959217 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 2255034 35975764 ~ 35986712 (-)
AMCG00020970 NA other upstream 787703 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 2297129 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 3336079 41596080 ~ 41602270 (-)

Expression


Co-expression Network