AMCG00020958


Basic Information

Item Value
gene id AMCG00020958
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38232666 ~ 38238994 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020958
GGAGATTCAAACACAGGCAAGTGTCGTGAAAGGACGAATCGTGGTTTAAGGCAGAGCGGACACCCTGCGCCTCCCGGGCGGCCTGAGCAGGCTGTGCGTTGCGGCAATGGCGTCCGCTCACAAGTGCCCGGGTTGCGGCTCCTGCAACCTGGTGGACGACTGCCTGTACTCGCAGAGCCAGCTGGTGTGCGCGGACTGCGGCGCCGTGGTGTCCGAGGGGCTGCTCACCACCACCCGCAGCGAGGAGCTGCAGGGCACAGACGTGAGGTACTCTGACAGTGCCGGAGTGGAGAAGCAGCCCGGTCGGACTCAGATAAAAGGCCTGCAGCGGGTGCGCACGATCTGCCGTGTCCTGCGCTTCCCCGCGGTCGTGGAGGAGTCGGCGCTAATCCTGTTTGAAAAGGCCTACAGACACCCCAATTTCCTGGGAGTCAGCCTATGGAAGAAGGAGTTGCTGGCGGGCTGCTGTGTGCTGGTGAGCTGCAGGCAGCACGGCTGGCCGGTCACCATGGGAACCATTAGCTCGCTGTTGCACGCTGAACCCGGCATGATCGGAGGTGTGTACCTGGAGATGGTACGCTGTCTCCAGCTGCAGTGTACCTCCAGCAGCCTGAGTGAGCTGGTGCAGAGCCACTGTAGCAGTTTCCAGCTGTCTGCGCCTGGCGTGCCAGAGCAGCTGCATGAGAACACACTCCAGCTGTCAAAGCGGGCGGCATCTTTGGTGGAGCTGGCAAGCGAGGCCTGGTTGGTGACTGGCCGCCAGCCCGTGCCCATCCTCACCGCCGCCATCTACCTGGCCTGGCTCTCTCTCAACCCCTGCAAGGCCCGCCTCCGCTTCTCACTCGGCAAGTTCTGCAAGCTGGCCGGGGTGTCCCTGCCGCCCCCCACCATCAAGAGAGTTGCGGAACTCCAGGACGCCCTCTGCAAGCTGGGGAAGGAGTTGCCCTGGCTGAGAGGCACCCAGCTGGAGCAAAAGACGGTGGTTAGGTACACCGAGGATATCCTGAAGTGCCGCACCGCCCTGCTGAGGAGAGCCATGCAGAGACTTGAGAGGGAGGACAGTGGAGATGCAGTAGACACTGTGGCCATGGAGAACAGCAATGTGGTGGATGAAAAACTGGACAATGAAGAGCCCACAGCCACCTCTGATCTGGCACAGgacacagtcagtgtgtcagcggCTGCTGGGACAGAGGACAATAGTGAAGCCCTCAGAGAAGTGTCTCTAGCAGTTGACAATCTCTGCTCTGGGCGCTCTCCCGCAGACGGGGCAGCAGATACAGGGCAACTGACACAACGGCCAACCCAACCTCCATGGGGCGATGCAACGCAGATAGTCTCCAAGACCACAGACGGGACACAAGGCGGAGACCTGGCTGGAGTGGCCACAGAATCAGAGAAACGGCACCATTCAGTGTTCTTGCCGCCCTGCATGACGAACCCCAGCAAAAGGAGGAGAGTGGAAGCGAGGCCGGAGGAGGGAAAGGAAGTGACGGGAGATGAGGAGATTTCGGACAGTGAGATCGAAGGGTACCTCCGCAGCCCCCAAGAGATGAGGGATTTTGCTGCCGCTCAGGCTAAACTAGGTTAGCAGGCCGCTGTAGTGAGTACTGCACTAGACTTCACTGAGTTAACACCACTACCGTCTCAGTCACTGCTCTCCAATGAATCACTCTCAAATGGGCCTGAGCTTGACAATGGTCACTGGCTGCTTGCTGGGGTACTCAACTGGATTTCCACTTGGGTATGAAACATCTGTTGCTGCCCTAGAACTGACCTTGTGTTGGCTGAGAGAGTTCAGCCACTGGAGACCAACACTGGCTGCCTGCTCAGGTGTCGTAGAGTCCTACaactgctgctgaaaaacatctgCTCAAAGCACTACTGACAGAGTATTCAGCTTCGTCACTATGTTACATAATTTGTAGCCTAAGTCTaaacatgtaatatttataGTTCAGTTCAAATTGagttaatgtgtaataatgtacAGTAATACTGTACAGATTTTTAGTAATGGACCTACTTTATGTACATAATCATAATGCAGATTTAATAAAGTGATCTCCAGGTGGTCAATCCTGCAAGTTAATCATTGTTGTTGCTGAATTTAAGGTGGTGTATACAGATACAGTACTGAGCAAAAGTATAGGTGGACAGgag

Function

GO: NA

KEGG:

id description
K15197 BRF2; transcription factor IIIB 50 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020958 True 2163 mRNA 0.56 5 38232666 38238994

Neighbor

gene id symbol gene type direction distance location
AMCG00020952 NA coding downstream 137076 38095102 ~ 38095590 (-)
AMCG00020953 NA coding downstream 201694 37968172 ~ 38030972 (-)
AMCG00020949 LOC103357666 coding downstream 340326 37842900 ~ 37892340 (-)
AMCG00020947 nfu1,LOC101072203,LOC107752565 coding downstream 410803 37815894 ~ 37821863 (-)
AMCG00020948 gfpt1,LOC103362312,LOC108426669,LOC102792631 coding downstream 417769 37772151 ~ 37814897 (-)
AMCG00020957 NA coding upstream 2752 38241746 ~ 38260001 (-)
AMCG00020959 NA coding upstream 39641 38278635 ~ 38300419 (-)
AMCG00020961 NA coding upstream 127133 38366127 ~ 38410862 (-)
AMCG00020960 NA coding upstream 188886 38427880 ~ 38458638 (-)
AMCG00020971 NA coding upstream 766436 39005430 ~ 39009794 (-)
G66851 NA non-coding downstream 51392 38181037 ~ 38181274 (-)
G66817 NA non-coding downstream 332788 37899467 ~ 37899878 (-)
G66786 NA non-coding downstream 493469 37736763 ~ 37739197 (-)
G66740 NA non-coding downstream 737296 37495123 ~ 37495370 (-)
G66685 NA non-coding downstream 964443 37267782 ~ 37268223 (-)
G66872 NA non-coding upstream 39000 38277994 ~ 38278539 (-)
G66920 NA non-coding upstream 455998 38694992 ~ 38697487 (-)
G66926 NA non-coding upstream 468278 38707272 ~ 38732240 (-)
G66927 NA non-coding upstream 485297 38724291 ~ 38772808 (-)
G66994 NA non-coding upstream 798166 39037160 ~ 39038645 (-)
AMCG00020943 NA other downstream 600090 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 1164861 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 1186727 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 1950137 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 2245954 35975764 ~ 35986712 (-)
AMCG00020970 NA other upstream 808710 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 2318136 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 3357086 41596080 ~ 41602270 (-)

Expression


Co-expression Network