AMCG00020960


Basic Information

Item Value
gene id AMCG00020960
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38427880 ~ 38458638 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020960
ATGCGCAACTCCCCAAATAAGCAAAAAGGAGGGAGCGGGTTTAGAGGGTGGAGGGGTTGCCAAGGATCCCAGGAGAGGCGTTTGGAAATTCTGGACCATGTGAACGGCTCCCGCATCGTGTTCTCTGATGATGCCCAGAGGATGCAATGCCAATATCCTTCCCCCCCTGCCTCCTTGTGCCTCTCCCCCCCGGGAACAAAGTGTGACGGCTTCCCCACCCTGGAGGACTTCATTCCGGGGCATCTGCTCTCAGACGCAGCCCAGGGGGTGGCCTTCTCTACTGGCTTACCCACCCCACCTCTCAGCCCTTACCACacctccacccccacctccaCTCACCTTCCACACCCACAGAAAGCAAGTTACCTTTTAGTTTCCGAGATTAATGGAGGGGTGTCACGTACCCTGATGTTTGGGTTCACAGACTCCACATCCCAACAGACCAGCAATAGGGGGGAACGCCGAGGCACAGATCAGCACAGCGTTAATCAATATGGGGGGAGGTTGACAAATGGGTCGAGCGCCGTGCTGAGCACCAGTCTTGCCCACTCCCAGCTTTCAGAGGGCTGGCGGGACATCCCCAAATCCTCCAACACCCCCACCAGCCCCCTGCCGCTGCCCCCCAGCCCGCCCCGCCACTACAGAGTGCCATCAGATGGGCAGCAGCACGGTGAAGAGAGGTGGGTGAAGTTTGCTGGCATCGGGCCCGTGGACGAGACCGGGATGCCCATCGCCTCCAGATCGAGTGTCAACAAGCCCAGAGACTGGTACAAGAGCATGTTCAAACAGATCCACAAGAAACCATCAGAACTTGATTTTGATGGCACTGGGCCACACTCTTTGGAGGGGGCCCCCCGGTCCCCCAGACCGACTGTCTCTGTGGATGTTGTAGACGGACGTGGCCCAGACGCAGACCCCTTCAGCCTCTCTCAGTATGGCTCTCTTCCTGACTGGAGTGAATTGGGGACCGGAGACAGACAGCACCCAGAGCCAAGAAGCATATTTGACTACGAACCTGGCAAGACGTCTACGCTGGGGGATCAAACCCAGGAAGAAGGGCCTCCACAGAAGCCTTCAGCAGAGCCGCAGTCACTGCCCATCGAGGTGACTCTAGCCAAAGAGCTGAGGCAGTTTGAGGCCGAGTTGGACTCCGACATCAAGGGCCTCGAGAGGCGGCTGTCTCAGAAACAGCAACGGCGAGGCCGGGGTGAGGGCTTGCCGAGCAACGTCCCAGTGAGAGCCCAGCCAGTGACTGGAACTGAAGACAGCAGGTCTTTGACAACAGAAAAGCAGCCAGTGACAAAGGGATTTGACCACTCAGCTATCCGCAGGGGCGGAGCCAGCCCCACAATTGATAGGCGCAGTCCTGTGGCTGTGGCTGAAGCCATGGAGTTCCCTCCTAAACGAGAGGAGAAGAAGGTGAGAGCTGGGGAGAAAGAGCTTACTCTGCAGAAGGGAGATGTGGTTTACATTCACAGGCAGGTGGACGCCAACTGGTTTGAAGGAGAGCATCATGGGAGAGCGGGTATCTTTCCAACCAGCTATGTGGAGaTAATCCCCGCAACAGAGAAGCCCACGCCTATCAAGTCACCCACCATCCAGGTGCTGGAGTATGGGGAAGCTGTGGCTCAGTTCAACTTCTCAGCTGACCTGCCAGTTGAACTTTCCTTCCGCAAGGGGGAGCATATCTGTGTGACACGTCGTGTGGATGACAGCTGGCTGGAGGGCAAGATCTCTGGCACAACTCGCAGTGGCATCTTCCCTGCCAACTATGTGCAGGTGATCAAAATGCCACGCACCAAGTCTTCATCTGATGACCATCCAGGCTCCCCCCCAGCCACCCAGCCCAGTCACCCCCAGCCCCTGAGCCCCGCTCAGCCCCAGATATCCCCTTCTCCTCAGCCTCCCAACCCGGCCCTGCACGGCCCCCCCTGGCACAGCACAGACCCTCTCCAATCCCCCTCTCTACAGAATTCCCAATCCCCAGCCCGTCTCCCCATGTCCCCTTTCTCCTCCCCAACAACCCCCCAGGGAAATTCAGTCTTCCAGCCCCGGCCTCCACAACCACTCTCCCCCTCGCCACTCAAGCCTGGCTCCACCCTGTCTCCTGCCCACCCCGCCCCTTTGAAGCCTGCCTCCACCCACTGGGCAAACTCTGCCCCTAGCCCTGCCTCCTCCCCACTACAGACCGGAGCTCAGTTCAATCACTGGGTGGGACCAAAGCCTCCAAGCCACACCCCCTTGAACAGGCAGGCCGGGTCTTCCATTTCACCGTCCAATCAGACTCCAGCATCTCCCAACTGGGCAGGTACAACGGTGAACTCCGTCCACAAGCCTGCTTATTCTTCTCAAGACGCCGTCCCACCCAACACTGTCCAGTCCCAGAATAACATGAGGTCCCTGCCCTCACCACAGATGTCTCCCAATAACAGCTCCTCGCAGATCATACGGCACTTGTATAAAGCCATTTACAACTACATGCCCCAGAACAACGATGAACTGGAGCTGCTAGAAGGAGACATTGTGCAAGTGATGGAGAAGTGTGATGATGGCTGGTATGTAGGTACATCACAAAGGACTCGAGCATTTGGGACTTTTCCAGGCAACTATGTGACACTAGTCTAGGGGCACAAGTGGAATAGGACTGGCATTTTCTGCCAATTAGCTGTAATCCCAGGCTGGACTGAAGTTTAATACCACAGGGCACACTTCCTGCAGCTTGCTACAGTCAGATAACCACTAATGAACACCAGTCACTCCCCCAGCCTCCATTCACAGAGCCGTCACTCAGTTGTGCCTATTAGAGTTCCAGCTTTGCTTTGGGTAATTGAATGCCTTGCTTCTACTGAATGAATCGCAGCAGACCATTATTGTGTATCGGCACTGCTCGAGACTGAGTTTGTCTCATTGACAATCATGGGCGTGAAGAAGATGGAGTTTACATCAACTGAGTACTTTGTACTTGGATCATACAAAATCTTGTGGTGTAGCCTTACTGGACATTCAGATTCTTCCTCAACTTTGATAAACCAACCTGGAATACAGAGGTTCACCAGGGACCACAAAGCATGCATTGGATTCCTGCAGAACCAGAAGAAGAAACATTACGGtttgccttttttcccctcagttaAACATTTGCCGCCCATGTGAAAATCTTAACACTTGTCTTGGCAAAAATCTTTCTTCCGATTCTTCCGATGCAGAATCAGCCTTGCTTCAATCTCAATGTCTTGACCACTGGTACAAGTGTGGGATTTCCAAAGGGGAAGTCTAGGGATAGGTCATCTCGGAAATCATCGCTTGTGCTTTTTGGGGACCTTGCTTTTTGTACAGCTCCAAGAACCAAGATTTAAAGCCACAAGAGCATTTTACCAGCCAAGCCTAGCCGTTGAATCCTCAGATGTTCGGACTGATGGACGTTTTGTGTGgattaaacttttaaaagatGTTGATTAAGCACACACTGCTGCCTAGGCTTCTACCCTGTCTTGGTCTACACCTCGGCTCCTTTTCCCAGTAAAAgggttgggaaaaaaaaagtgcctttGATCTTCATTGTACACTTCCTTTGTGTTATGTGATTGGATATCTTTGCCTTTTGTACTGAAGCAGACAGAGAACTGCAAAGGAGCGAATGAGGTTTCATGATTGTATAGATGCAGGGTATGACAGGTgacaggtttttaaaaatacacgaCAAAAGTAATTACTCACATTCCACATCCCCTTTTGAGCTTTATAATTCACCCTTCCAGAATGACTGGGTCAGACAATGGTATAAATACAGCCGAGAATCTCAGACCAGCCTTTAAGCATCTTTACCTTTAAATAGACCTTGCTGTAAAGATAACAGAAAGCCGCCCTTGTGACTGTTTCCTAGCAAACTCTTGCACAATAAGAGCAGCTCCAGTATTGCACAAGAAAGGGTCATTCCACAATAAATGTCTTCAAAAAGGGAAAATTGGACACACACCAGTCTACCAATAATTGAAACCTTATTACTTTTGACTCCTTTCAACTATTGCTGTTTATACCTTCATGCTTTAAAGAGGTTACATAGAGAGTCTTAGCTTTTATGGGCTAATATGCAGTAAGAAGGATTTGTGATCGAGCCACTAttggataataataatgcatttgtgaTGATTTGAACCCTTTGAATGTAGTTTCAGAATGCATGgtatgcatatatgtgtgtatgttaaatatacaaacatccatgcaaaaataaaatgcaggaaaAGCTGAACATTAAGGAATAGAGCTTACAGCTGGGAGCCCCAATGGCAACATCCCTAAAATACAGTGAAACTACTGATATGAACAGAAGGCCAAACCTGCTCCACCTAGGCCTGGACCATACACTGTCTGCAAGAATCTCTGAGGACTTTACGAAGACTGAAACTGCTCATTAATGGGTTCAATGATCTGAGGAAATTGATCATATCTCCACTGGCCCCTGTTTTAGAAGCCATGGGTCTGCCTCAGGCCGGATACAAATATGGAGAAGAAGATCTAACCAAGTGTTCTACAAGGTCTGATTGTCAAGACCCACAATGGTGTCTCTCTGGTTTACATTCCACCTGAGTGCTATCCTTTCAAAAGCCTGCTGGAGTGTAGCCTGTGGCCTTTGAGGAGTGGATTTGAAGGAGACTGCTTTAAGCATTAAGTCACCAAGTTAGAAATGGCACAAGAAACAGACAAAAGTGAAATAGAAAACTGATAAAACAACTATACAAGAAAACGACATCTTTACATTCGTAtgaaaaaagatttaaaatatacagcactATGCAAATCTTATTGggtgcctttctttttttacgaTATGCTATTGAACTGTTAAAATGATATCAGAAGATTGATTTCAGCAAATGCAACCCTTCAGAGGGACCAGAAAATGTGTCAGCAAgttacattttgctttaattttgtcTCGTTTTTCCACGTAGTCCGATTTTGCATTTGCTTACGGCAGCGGTTTCTTTGCTGTGTCCAGTCCTGAGtggaacatgtttttttccccccattctGCCGTGATTTGCTGAACTTGCTAAACTTTTTAGAGGCTCACAAAGACATTCTGATGGGTGTAGTCAATTCTGCTGACTGGGGAACAGAGCATCATACAGTGTTACTCACACATATAAAGCCTAGAAATTTGGGGGGGCTTGCTCAAACGTGTCATTATTAAAAGTCACTTGTGTTCCGGAGCACATGTCTGAATTTGGTCAAATGATTCTTTGTACTAGCGATTCTTTTAATTCTAGCAATTATTGTGCTTACTGAGGTTGCAGTATTACATTCACACATCTACCAAACGGCTCCATAATCCCCCAAACTCCACAGATGGGGATATTATTTCAGGACTAGTTTGCGTATTATATATTGACTAGtgtattgctttaatttgcaCTAAATTTGCTTGTAAATATAAGGCATTTAATTCAAACAGGAGATAGCAGGGCTGTCAAACTCCAGTCATGCAGGGCTGTGGCATCTTCCAATTTTCATTTCAGATCAGCTCTTAGCACCTTAGTAAGCTGGCCTATTTTAATGATTAACTGGAGGAACTGAatacttctctccagactccaaaatgtttttcgGGTACAGTATTTGGAGTAATCAACGGAGCTTTATGCTGCTTTAAGCCATGAACTTGTAATTAGACATTGCCAATAGTGTAAGCACAGGACACACTGCATTTTCAAAGTCCTGTCTGAATAAAGTGCACATAAAACAAGCACAACTAAAGACAAATGCAAGCCTACTACTTCCACTCCTGTACAAGATATGCTGTAGCACAGACACTGCATTGTTAGTTCAGTTCataaattacagaaacaaataatatatttcagaatgtatttcatTGTCATCTAAGGTACTCGCTTATTTTGATGAATGATGAATAAAAGTATTCAATGAGGGGGGA

Function

GO: NA

KEGG:

id description
K23709 SORBS3; vinexin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020960 True 5941 mRNA 0.48 19 38427880 38458638

Neighbor

gene id symbol gene type direction distance location
AMCG00020961 NA coding downstream 17018 38366127 ~ 38410862 (-)
AMCG00020959 NA coding downstream 127461 38278635 ~ 38300419 (-)
AMCG00020957 NA coding downstream 167879 38241746 ~ 38260001 (-)
AMCG00020958 NA coding downstream 188886 38232666 ~ 38238994 (-)
AMCG00020952 NA coding downstream 332290 38095102 ~ 38095590 (-)
AMCG00020971 NA coding upstream 546792 39005430 ~ 39009794 (-)
AMCG00020974 NA coding upstream 635859 39094497 ~ 39096651 (-)
AMCG00020975 NA coding upstream 658797 39117435 ~ 39529985 (-)
AMCG00020977 NA coding upstream 1188111 39646749 ~ 39666597 (-)
AMCG00020979 NA coding upstream 1218279 39676917 ~ 39677327 (-)
G66872 NA non-coding downstream 149341 38277994 ~ 38278539 (-)
G66851 NA non-coding downstream 246606 38181037 ~ 38181274 (-)
G66817 NA non-coding downstream 528002 37899467 ~ 37899878 (-)
G66786 NA non-coding downstream 688683 37736763 ~ 37739197 (-)
G66740 NA non-coding downstream 932510 37495123 ~ 37495370 (-)
G66920 NA non-coding upstream 236354 38694992 ~ 38697487 (-)
G66926 NA non-coding upstream 248634 38707272 ~ 38732240 (-)
G66927 NA non-coding upstream 265653 38724291 ~ 38772808 (-)
G66994 NA non-coding upstream 578522 39037160 ~ 39038645 (-)
G67010 NA non-coding upstream 617072 39075710 ~ 39092196 (-)
AMCG00020943 NA other downstream 795304 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 1360075 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 1381941 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 2145351 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 2441168 35975764 ~ 35986712 (-)
AMCG00020970 NA other upstream 589066 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 2098492 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 3137442 41596080 ~ 41602270 (-)

Expression


Co-expression Network