AMCG00020963 (egr3,LOC106579855,LOC106585589)


Basic Information

Item Value
gene id AMCG00020963
gene name egr3,LOC106579855,LOC106585589
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38688163 ~ 38694505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020963
ATGACAGGGAAACTAGCGGACAAGCTCCCTCTTACCATGAGCAGTTTAATAAACACGATTCCTGAGAGCCTTTACCCCGAGGAGGACATTCCTACGTCTATGAACATTTTCACCAGCACGGATACTATTTCTCACTATCCGCAGATGAACACAGACAATATCATGGATCTGGGGATGGGCAGCGAGAAGGGGACCCCTGAGCTCCAGTACGGGTCCAGCTTCCAGCCCAGCCGCAGTGGCCAGACGGTCACCTACCTGGGCAAGTTTGCCTTCGACGCGCCCCCTTCAGGCGGGATCAGCAGCTCGGGATGGTGCTCGGACAACAACATCATCAGCTTGGTGAGCGCCGGCATCCTGGGGGTGTCCCCGTCTCCGGGAGCCATCACCACCCAGACCTCCTCCTCGGCCGGCAGCATGGGCGGCCAGTACTcggagctggagcaggtgtATGGCACCCCGTTGCCCGCCCACTCCGCCTGCAGCGACATGTACCAAGACCAGGTCTCCTTCCACAGCCCCGCCACCACCACCCCTCTCCCGTACCCCAACACCGACTACCACAGCACCAGCAAGCCCTCGATGGACAGCAGCCTGTTCTCCATGATCCCCGACTACAACCTGTTCCACCACCAGGGGGAGGTAAGCGTGATGGAGCACAAGCCCTTCCAAAGCATGGATCCCATCCGTGTCAACCCCCCACCCATCACGCCACTGGAAACCATCCGGGCCTTCAAAGACAAGCAGATCCATCCAGGGTTTGTGGGCGGCCAACAGCATGCCCCGCAGCACCACCAGCCCCCTCAGACTCTCACCCTCAAGCCCATCCGGCCTCGGAAGTACCCCAACCGCCCCAGCAAGACGCCCGTCCATGAGCGGCCCCACGCCTGCCCGGCCGAGAACTGCGACCGGCGCTTCTCCCGCTCCGACGAGCTGACGCGCCACCTGCGCATCCACACCGGCCACAAGCCCTTCCAGTGCCGCATCTGCATGCGCTCCTTCAGCCGCAGCGACCACCTGACGACACACATCCGCACGCACACCGGGGAGAAGCCCTTCGCCTGCGAGTTCTGTGGCCGCAAGTTCGCCCGCAGCGACGAGCGCAAACGCCACGCTAAGGTGCACCTCAAGCAGAAAGACAAAAAGCTGGCGGAGAAGTCTTCGTCTGCCGCTGCTGCTGCGGCAGGGGCAGCGGCGGCCGGCCATCACACCTCCCCTCCCGGCTCCtgtggcggcggcggcgggggcAGCGGTGGGAGCATAATGACTGTGACCACCTGTGCTTAA

Function

symbol description
egr3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in hindbrain; myeloid cell; optic tectum; and telencephalon. Orthologous to human EGR3 (early growth response 3).

NR:

description
PREDICTED: early growth response protein 3-like isoform X1

GO: NA

KEGG:

id description
K12497 EGR3; early growth response protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020963 True 1284 mRNA 0.63 2 38688163 38694505

Neighbor

gene id symbol gene type direction distance location
AMCG00020962 rhobtb2,LOC106585588 coding upstream 171821 38491712 ~ 38516342 (+)
AMCG00020956 NA coding upstream 413008 38259518 ~ 38275155 (+)
AMCG00020955 LOC108426712,LOC103357663,LOC100712487,LOC106536361 coding upstream 460059 38226246 ~ 38228104 (+)
AMCG00020950 NA coding upstream 576264 38106012 ~ 38111899 (+)
AMCG00020951 NA coding upstream 656197 38030728 ~ 38031966 (+)
AMCG00020964 NA coding downstream 62230 38756735 ~ 38772815 (+)
AMCG00020965 NA coding downstream 90374 38784879 ~ 38812254 (+)
AMCG00020967 LOC108444561,LOC104924995,LOC105889889 coding downstream 186091 38880596 ~ 38885107 (+)
AMCG00020966 NA coding downstream 204440 38898945 ~ 38901605 (+)
AMCG00020968 LOC106579847,LOC108236587,LOC105014870 coding downstream 258980 38953485 ~ 38972284 (+)
G66887 NA non-coding upstream 262911 38424712 ~ 38425252 (+)
G66865 NA non-coding upstream 411869 38275990 ~ 38276294 (+)
G66861 NA non-coding upstream 443688 38240690 ~ 38244475 (+)
G66826 NA non-coding upstream 622498 37974803 ~ 38065665 (+)
G66801 NA non-coding upstream 825831 37837102 ~ 37862332 (+)
G66970 NA non-coding downstream 316074 39010579 ~ 39010849 (+)
G66995 NA non-coding downstream 354916 39049421 ~ 39049631 (+)
G67027 NA non-coding downstream 610792 39305297 ~ 39305587 (+)
G67048 NA non-coding downstream 1054652 39749157 ~ 39749361 (+)
G67180 NA non-coding downstream 1875822 40570327 ~ 40571722 (+)
AMCG00020954 NA other upstream 551090 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 1112307 37567036 ~ 37575856 (+)
G66551 NA other upstream 1770727 36914815 ~ 36917436 (+)
G66506 NA other upstream 2431652 36254699 ~ 36256511 (+)
G66362 NA other upstream 2779761 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 1626608 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 1861461 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 2356967 41051472 ~ 41062527 (+)
G67323 NA other downstream 2903718 41598223 ~ 41602113 (+)
G67459 NA other downstream 3358425 42052930 ~ 42053675 (+)

Expression


Co-expression Network